Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23773 | 3' | -57.5 | NC_005261.1 | + | 47709 | 0.75 | 0.38409 |
Target: 5'- -gUCGGCGGCGUCG-GGGGCcUCCuCGg -3' miRNA: 3'- agAGCUGCUGCAGCgCCCUGuAGG-GC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 104818 | 0.75 | 0.392252 |
Target: 5'- gCUCcgcaGCGGCGUCGCGGGGCcgCgCCa -3' miRNA: 3'- aGAGc---UGCUGCAGCGCCCUGuaG-GGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 106644 | 0.75 | 0.40891 |
Target: 5'- gCUCGGCGACGUCGCGcucgccggcgcGGuCGUCCa- -3' miRNA: 3'- aGAGCUGCUGCAGCGC-----------CCuGUAGGgc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 11014 | 0.73 | 0.479706 |
Target: 5'- cCUCGACGGCcucGUCGcCGGGccCGUCCCc -3' miRNA: 3'- aGAGCUGCUG---CAGC-GCCCu-GUAGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 39778 | 0.73 | 0.498336 |
Target: 5'- cCUCGAgGACGUCGCcggGGGGCggCgCGg -3' miRNA: 3'- aGAGCUgCUGCAGCG---CCCUGuaGgGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 104275 | 0.73 | 0.507771 |
Target: 5'- gUCUCGGCGGCuG-CGCGGGccucGCAggCCCGc -3' miRNA: 3'- -AGAGCUGCUG-CaGCGCCC----UGUa-GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 46385 | 0.72 | 0.565793 |
Target: 5'- cUCUCGGCGccggcccCGUCGCcgacGGuGGCGUCCCa -3' miRNA: 3'- -AGAGCUGCu------GCAGCG----CC-CUGUAGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 47534 | 0.72 | 0.573675 |
Target: 5'- aCUCGACGGCGUucccgggCGCGGcgaaguuGGCGUgCCCGu -3' miRNA: 3'- aGAGCUGCUGCA-------GCGCC-------CUGUA-GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 110222 | 0.72 | 0.57565 |
Target: 5'- cCUCGGCGACGccuccagCGUGGGcggcGCGgcgCCCGg -3' miRNA: 3'- aGAGCUGCUGCa------GCGCCC----UGUa--GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 25038 | 0.71 | 0.60443 |
Target: 5'- uUCUC-ACGugGUCGCGGGccccaaaaaccugGCAcgguUCCCa -3' miRNA: 3'- -AGAGcUGCugCAGCGCCC-------------UGU----AGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 46488 | 0.71 | 0.605426 |
Target: 5'- gCUCGGCGcCcucCGCGGGGCGcagCCCGg -3' miRNA: 3'- aGAGCUGCuGca-GCGCCCUGUa--GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 71409 | 0.71 | 0.625382 |
Target: 5'- ---aGGCGGCGUccggCGCGGGGCccggCCCGg -3' miRNA: 3'- agagCUGCUGCA----GCGCCCUGua--GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 42201 | 0.7 | 0.635371 |
Target: 5'- gCUCcACGGCGcCGCGcGGGCGcCCCGc -3' miRNA: 3'- aGAGcUGCUGCaGCGC-CCUGUaGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 123458 | 0.7 | 0.635371 |
Target: 5'- --aUGACGcCGUCGCGGG-CcUCCCa -3' miRNA: 3'- agaGCUGCuGCAGCGCCCuGuAGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 130256 | 0.7 | 0.655334 |
Target: 5'- --gCGGCu-CGUacUGCGGGGCGUCCCGc -3' miRNA: 3'- agaGCUGcuGCA--GCGCCCUGUAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 45005 | 0.7 | 0.665293 |
Target: 5'- gCUCGAUGACcUCGUGuGGAacgcgGUCCCGc -3' miRNA: 3'- aGAGCUGCUGcAGCGC-CCUg----UAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 3892 | 0.7 | 0.665293 |
Target: 5'- gCUCGGCGAgCGcggCGCGGG-CG-CCCGc -3' miRNA: 3'- aGAGCUGCU-GCa--GCGCCCuGUaGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 32384 | 0.7 | 0.675226 |
Target: 5'- ---aGGCG-CGgCGCGGcGGCGUCCCGg -3' miRNA: 3'- agagCUGCuGCaGCGCC-CUGUAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 24390 | 0.7 | 0.675226 |
Target: 5'- gCUCGuCGGCG--GCGGGGCgGUCCUGg -3' miRNA: 3'- aGAGCuGCUGCagCGCCCUG-UAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 69178 | 0.7 | 0.685126 |
Target: 5'- cCUUGACGAgggcacCGUCGCGGacgcggccaacGACGUCCUc -3' miRNA: 3'- aGAGCUGCU------GCAGCGCC-----------CUGUAGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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