miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 3' -57.5 NC_005261.1 + 32497 0.67 0.840146
Target:  5'- --gCGACGGCGgcaUCgGCGGGGgGUCCgCGc -3'
miRNA:   3'- agaGCUGCUGC---AG-CGCCCUgUAGG-GC- -5'
23773 3' -57.5 NC_005261.1 + 33601 0.66 0.863182
Target:  5'- ---gGGCGGCGccggCGCGGGcgGCGgggCCCGg -3'
miRNA:   3'- agagCUGCUGCa---GCGCCC--UGUa--GGGC- -5'
23773 3' -57.5 NC_005261.1 + 38414 0.66 0.870471
Target:  5'- cCUCGcCGcUGUCGCGGG-CG-CCCu -3'
miRNA:   3'- aGAGCuGCuGCAGCGCCCuGUaGGGc -5'
23773 3' -57.5 NC_005261.1 + 39778 0.73 0.498336
Target:  5'- cCUCGAgGACGUCGCcggGGGGCggCgCGg -3'
miRNA:   3'- aGAGCUgCUGCAGCG---CCCUGuaGgGC- -5'
23773 3' -57.5 NC_005261.1 + 42201 0.7 0.635371
Target:  5'- gCUCcACGGCGcCGCGcGGGCGcCCCGc -3'
miRNA:   3'- aGAGcUGCUGCaGCGC-CCUGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 45005 0.7 0.665293
Target:  5'- gCUCGAUGACcUCGUGuGGAacgcgGUCCCGc -3'
miRNA:   3'- aGAGCUGCUGcAGCGC-CCUg----UAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 45041 0.68 0.798249
Target:  5'- cCUCuGCGAgGUCcgcgaaauccugGCGGGGCcgCCCa -3'
miRNA:   3'- aGAGcUGCUgCAG------------CGCCCUGuaGGGc -5'
23773 3' -57.5 NC_005261.1 + 46385 0.72 0.565793
Target:  5'- cUCUCGGCGccggcccCGUCGCcgacGGuGGCGUCCCa -3'
miRNA:   3'- -AGAGCUGCu------GCAGCG----CC-CUGUAGGGc -5'
23773 3' -57.5 NC_005261.1 + 46488 0.71 0.605426
Target:  5'- gCUCGGCGcCcucCGCGGGGCGcagCCCGg -3'
miRNA:   3'- aGAGCUGCuGca-GCGCCCUGUa--GGGC- -5'
23773 3' -57.5 NC_005261.1 + 47157 0.68 0.76766
Target:  5'- -gUCGGCGGCcgagaccaccaGCGGGACG-CCCGg -3'
miRNA:   3'- agAGCUGCUGcag--------CGCCCUGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 47534 0.72 0.573675
Target:  5'- aCUCGACGGCGUucccgggCGCGGcgaaguuGGCGUgCCCGu -3'
miRNA:   3'- aGAGCUGCUGCA-------GCGCC-------CUGUA-GGGC- -5'
23773 3' -57.5 NC_005261.1 + 47709 0.75 0.38409
Target:  5'- -gUCGGCGGCGUCG-GGGGCcUCCuCGg -3'
miRNA:   3'- agAGCUGCUGCAGCgCCCUGuAGG-GC- -5'
23773 3' -57.5 NC_005261.1 + 49120 0.68 0.762114
Target:  5'- cCUCGagcGCGGCGg-GCGGGACc-CCCGc -3'
miRNA:   3'- aGAGC---UGCUGCagCGCCCUGuaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 50908 0.66 0.86758
Target:  5'- cCUUGAuCGGCGccgccucgccgggCGCGGGGC-UCCCc -3'
miRNA:   3'- aGAGCU-GCUGCa------------GCGCCCUGuAGGGc -5'
23773 3' -57.5 NC_005261.1 + 55174 0.66 0.870471
Target:  5'- --cCGGCGGC-UCGCGGGGCGgaUCGg -3'
miRNA:   3'- agaGCUGCUGcAGCGCCCUGUagGGC- -5'
23773 3' -57.5 NC_005261.1 + 56186 0.66 0.848013
Target:  5'- ---gGACGACG-CGCGGG-C-UCCCu -3'
miRNA:   3'- agagCUGCUGCaGCGCCCuGuAGGGc -5'
23773 3' -57.5 NC_005261.1 + 56576 0.67 0.806945
Target:  5'- cCUCGGCGGCGacgacgGCGcGGACccCCCGc -3'
miRNA:   3'- aGAGCUGCUGCag----CGC-CCUGuaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 59463 0.68 0.771334
Target:  5'- --cCG-CGGCGUCGgGGGGCAgCgCCGg -3'
miRNA:   3'- agaGCuGCUGCAGCgCCCUGUaG-GGC- -5'
23773 3' -57.5 NC_005261.1 + 60840 0.66 0.863182
Target:  5'- aUCggcggCGGCGAgGUCGCGcgccGGGCcgagCCCGc -3'
miRNA:   3'- -AGa----GCUGCUgCAGCGC----CCUGua--GGGC- -5'
23773 3' -57.5 NC_005261.1 + 60929 0.68 0.771334
Target:  5'- --aCGGCGGCGaccCGCGGGcCGUggCCCGa -3'
miRNA:   3'- agaGCUGCUGCa--GCGCCCuGUA--GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.