miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 5' -58.7 NC_005261.1 + 59367 0.66 0.780349
Target:  5'- ----gGGUguCGCCCGCcagcgcccgcgccacGGCGCCGAg -3'
miRNA:   3'- aaguaCCAguGCGGGCGu--------------CUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 93669 0.66 0.779426
Target:  5'- ----cGGUCcgcgggcggcgGCGCCgGCgGGGCGCCGGc -3'
miRNA:   3'- aaguaCCAG-----------UGCGGgCG-UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 37743 0.66 0.760701
Target:  5'- -----cGUCGCccCCCGCGGGCGCCGc -3'
miRNA:   3'- aaguacCAGUGc-GGGCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 16236 0.66 0.779426
Target:  5'- cUCGgggcGGUCgACGUCCGCgccgGGGCcGCCGGg -3'
miRNA:   3'- aAGUa---CCAG-UGCGGGCG----UCUG-CGGCU- -5'
23773 5' -58.7 NC_005261.1 + 103181 0.66 0.731789
Target:  5'- ----cGGUCcugcACGCCCGCGGucACGCgCGGc -3'
miRNA:   3'- aaguaCCAG----UGCGGGCGUC--UGCG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 30346 0.66 0.728851
Target:  5'- ----cGGcCGCGCUCGCGGcccugaaggccggcGCGCCGGg -3'
miRNA:   3'- aaguaCCaGUGCGGGCGUC--------------UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 60106 0.66 0.731789
Target:  5'- ---cUGGccagCGCGCCCGCGGGCacguagGCCGc -3'
miRNA:   3'- aaguACCa---GUGCGGGCGUCUG------CGGCu -5'
23773 5' -58.7 NC_005261.1 + 68744 0.66 0.731789
Target:  5'- ----cGGgaagaaGCGCCCGCcgGGGCGCCGc -3'
miRNA:   3'- aaguaCCag----UGCGGGCG--UCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 101529 0.67 0.671898
Target:  5'- gUCGcGGUCGCGCgCCGCcucGGcCGCCa- -3'
miRNA:   3'- aAGUaCCAGUGCG-GGCG---UCuGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 77256 0.67 0.682011
Target:  5'- cUCAaaagGG-CGCGCUCGCGGGCGgCGu -3'
miRNA:   3'- aAGUa---CCaGUGCGGGCGUCUGCgGCu -5'
23773 5' -58.7 NC_005261.1 + 79221 0.67 0.692084
Target:  5'- -aCAcGGUCgagagcgcgGCGCCCGCGG-CGCCc- -3'
miRNA:   3'- aaGUaCCAG---------UGCGGGCGUCuGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 118128 0.67 0.689067
Target:  5'- ----cGGcUCGCGCCgcucggccggcucgCGCAGACGCUGGc -3'
miRNA:   3'- aaguaCC-AGUGCGG--------------GCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 43774 0.67 0.682011
Target:  5'- cUCGUGGggcggCGCGCggagggcgCCGCgggugaggGGGCGCCGGg -3'
miRNA:   3'- aAGUACCa----GUGCG--------GGCG--------UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 106790 0.67 0.692084
Target:  5'- -gCGccGUCuGCGCCCGCAccaGCGCCGAg -3'
miRNA:   3'- aaGUacCAG-UGCGGGCGUc--UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 115396 0.67 0.702107
Target:  5'- cUUCAgcgGGUCGuCGaCCGCGGGCggcaGCCGGg -3'
miRNA:   3'- -AAGUa--CCAGU-GCgGGCGUCUG----CGGCU- -5'
23773 5' -58.7 NC_005261.1 + 133883 0.67 0.712071
Target:  5'- --uGUGGUCugcgcaaGCCCGCGGcGCGCUGc -3'
miRNA:   3'- aagUACCAGug-----CGGGCGUC-UGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 5249 0.67 0.721969
Target:  5'- -gCGUGGccggcUCGUGCCCGCcgggAGACGCCa- -3'
miRNA:   3'- aaGUACC-----AGUGCGGGCG----UCUGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 43273 0.67 0.721969
Target:  5'- gUUCGggGcGUCGCGgCCGCcuuucccgcgggGGGCGCCGGc -3'
miRNA:   3'- -AAGUa-C-CAGUGCgGGCG------------UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 75831 0.67 0.721969
Target:  5'- ----cGGcCGCGCCCGgGGaggggcgcgcgGCGCCGAc -3'
miRNA:   3'- aaguaCCaGUGCGGGCgUC-----------UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 93928 0.67 0.721969
Target:  5'- ----cGGgcuugCGcCGUCCGCGGGCGCCGc -3'
miRNA:   3'- aaguaCCa----GU-GCGGGCGUCUGCGGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.