miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 5' -58.7 NC_005261.1 + 37743 0.66 0.760701
Target:  5'- -----cGUCGCccCCCGCGGGCGCCGc -3'
miRNA:   3'- aaguacCAGUGc-GGGCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 97113 0.66 0.731789
Target:  5'- -gCcgGGcCGCGgCCGgAGGCGCCGn -3'
miRNA:   3'- aaGuaCCaGUGCgGGCgUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 125273 0.66 0.760701
Target:  5'- gUCcgGGggccgCugGaagucaggCCGCGGGCGCCGGa -3'
miRNA:   3'- aAGuaCCa----GugCg-------GGCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 127469 0.66 0.731789
Target:  5'- cUUCGgggGGUCAgaGUCC-CAGACGCUGGc -3'
miRNA:   3'- -AAGUa--CCAGUg-CGGGcGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 116069 0.66 0.741524
Target:  5'- -gCGUGG-CGCGCCggucccCGUGGAUGCCGc -3'
miRNA:   3'- aaGUACCaGUGCGG------GCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 112802 0.66 0.751165
Target:  5'- -aCAUGGaCACGgCCGgGGACGCg-- -3'
miRNA:   3'- aaGUACCaGUGCgGGCgUCUGCGgcu -5'
23773 5' -58.7 NC_005261.1 + 58885 0.66 0.760701
Target:  5'- gUCcgGG-CGgGCCuCGCAGGCGCgCGc -3'
miRNA:   3'- aAGuaCCaGUgCGG-GCGUCUGCG-GCu -5'
23773 5' -58.7 NC_005261.1 + 60106 0.66 0.731789
Target:  5'- ---cUGGccagCGCGCCCGCGGGCacguagGCCGc -3'
miRNA:   3'- aaguACCa---GUGCGGGCGUCUG------CGGCu -5'
23773 5' -58.7 NC_005261.1 + 59140 0.66 0.760701
Target:  5'- cUCAggccGG-CGCGCCC-CGGGCGCgCGGc -3'
miRNA:   3'- aAGUa---CCaGUGCGGGcGUCUGCG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 103181 0.66 0.731789
Target:  5'- ----cGGUCcugcACGCCCGCGGucACGCgCGGc -3'
miRNA:   3'- aaguaCCAG----UGCGGGCGUC--UGCG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 30346 0.66 0.728851
Target:  5'- ----cGGcCGCGCUCGCGGcccugaaggccggcGCGCCGGg -3'
miRNA:   3'- aaguaCCaGUGCGGGCGUC--------------UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 104831 0.66 0.741524
Target:  5'- gUCGcggGGcCGCGCCaCGCGGACcGCgCGGg -3'
miRNA:   3'- aAGUa--CCaGUGCGG-GCGUCUG-CG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 3297 0.66 0.770124
Target:  5'- ----aGGUC-CGCCCGCGG-UGCCc- -3'
miRNA:   3'- aaguaCCAGuGCGGGCGUCuGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 131449 0.66 0.741524
Target:  5'- ---uUGcGcCGCGCCuCGCGGGCGCCu- -3'
miRNA:   3'- aaguAC-CaGUGCGG-GCGUCUGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 62281 0.66 0.751165
Target:  5'- gUUGUGGUacaucacgucgGCGCCgCGCGGGCGCgCGGc -3'
miRNA:   3'- aAGUACCAg----------UGCGG-GCGUCUGCG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 94315 0.66 0.738613
Target:  5'- -cCAgggGGgcgccagcccgaacUCGCGCCgGUAGGCGUCGAu -3'
miRNA:   3'- aaGUa--CC--------------AGUGCGGgCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 68744 0.66 0.731789
Target:  5'- ----cGGgaagaaGCGCCCGCcgGGGCGCCGc -3'
miRNA:   3'- aaguaCCag----UGCGGGCG--UCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 2399 0.66 0.751165
Target:  5'- ----cGGcgagCGCGCCCGCGGGCcCCGc -3'
miRNA:   3'- aaguaCCa---GUGCGGGCGUCUGcGGCu -5'
23773 5' -58.7 NC_005261.1 + 49918 0.66 0.770124
Target:  5'- gUUGUGGcCcgccucgagGCGCCCGCGGA-GCCGc -3'
miRNA:   3'- aAGUACCaG---------UGCGGGCGUCUgCGGCu -5'
23773 5' -58.7 NC_005261.1 + 32060 0.66 0.741524
Target:  5'- -aCAUGGcCGCGCagagCGCGG-CGCUGGg -3'
miRNA:   3'- aaGUACCaGUGCGg---GCGUCuGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.