miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 5' -58.7 NC_005261.1 + 2399 0.66 0.751165
Target:  5'- ----cGGcgagCGCGCCCGCGGGCcCCGc -3'
miRNA:   3'- aaguaCCa---GUGCGGGCGUCUGcGGCu -5'
23773 5' -58.7 NC_005261.1 + 3297 0.66 0.770124
Target:  5'- ----aGGUC-CGCCCGCGG-UGCCc- -3'
miRNA:   3'- aaguaCCAGuGCGGGCGUCuGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 4511 0.68 0.651584
Target:  5'- -cCAgucgCGCGCCCGCgcGGGCGCCGc -3'
miRNA:   3'- aaGUaccaGUGCGGGCG--UCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 5249 0.67 0.721969
Target:  5'- -gCGUGGccggcUCGUGCCCGCcgggAGACGCCa- -3'
miRNA:   3'- aaGUACC-----AGUGCGGGCG----UCUGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 10967 0.66 0.777575
Target:  5'- -gCGUGGgccgccccgcccCGCGCCCGaCuGGCGCUGGu -3'
miRNA:   3'- aaGUACCa-----------GUGCGGGC-GuCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 16236 0.66 0.779426
Target:  5'- cUCGgggcGGUCgACGUCCGCgccgGGGCcGCCGGg -3'
miRNA:   3'- aAGUa---CCAG-UGCGGGCG----UCUG-CGGCU- -5'
23773 5' -58.7 NC_005261.1 + 17889 0.71 0.454364
Target:  5'- -gCAUGGUCAagaUGCCCuugGCGacGGCGCCGAu -3'
miRNA:   3'- aaGUACCAGU---GCGGG---CGU--CUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 21188 0.68 0.661753
Target:  5'- ---cUGGcgcgagCGCGgCCGCGGACGCUGGc -3'
miRNA:   3'- aaguACCa-----GUGCgGGCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 21622 0.69 0.600667
Target:  5'- cUUCGggcgagGGUCccCGCCCcggcGCGGACGCCGc -3'
miRNA:   3'- -AAGUa-----CCAGu-GCGGG----CGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 28856 0.72 0.392024
Target:  5'- gUCGUGGcCGcCGCCCuugaggcugcggcGCGGACGCCGc -3'
miRNA:   3'- aAGUACCaGU-GCGGG-------------CGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 30274 0.69 0.560299
Target:  5'- ----cGGcccgCGCGCCCGCcuGGACGCUGGc -3'
miRNA:   3'- aaguaCCa---GUGCGGGCG--UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 30346 0.66 0.728851
Target:  5'- ----cGGcCGCGCUCGCGGcccugaaggccggcGCGCCGGg -3'
miRNA:   3'- aaguaCCaGUGCGGGCGUC--------------UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 32060 0.66 0.741524
Target:  5'- -aCAUGGcCGCGCagagCGCGG-CGCUGGg -3'
miRNA:   3'- aaGUACCaGUGCGg---GCGUCuGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 37743 0.66 0.760701
Target:  5'- -----cGUCGCccCCCGCGGGCGCCGc -3'
miRNA:   3'- aaguacCAGUGc-GGGCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 42273 0.68 0.641399
Target:  5'- ----cGGcCGCGCCCaGCAGcCGCCGc -3'
miRNA:   3'- aaguaCCaGUGCGGG-CGUCuGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 43273 0.67 0.721969
Target:  5'- gUUCGggGcGUCGCGgCCGCcuuucccgcgggGGGCGCCGGc -3'
miRNA:   3'- -AAGUa-C-CAGUGCgGGCG------------UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 43774 0.67 0.682011
Target:  5'- cUCGUGGggcggCGCGCggagggcgCCGCgggugaggGGGCGCCGGg -3'
miRNA:   3'- aAGUACCa----GUGCG--------GGCG--------UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 44304 0.74 0.30782
Target:  5'- -cCAgGGcCGCuGCCCGCGGGCGCCGc -3'
miRNA:   3'- aaGUaCCaGUG-CGGGCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 46115 0.72 0.427353
Target:  5'- -cCGUGGUcCGCGUCCaGCAGGuCGCCGc -3'
miRNA:   3'- aaGUACCA-GUGCGGG-CGUCU-GCGGCu -5'
23773 5' -58.7 NC_005261.1 + 47432 0.68 0.641399
Target:  5'- --gGUGGgcgaaCACGUCCGaCAGGCGCCc- -3'
miRNA:   3'- aagUACCa----GUGCGGGC-GUCUGCGGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.