miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 5' -58.7 NC_005261.1 + 110001 0.83 0.081234
Target:  5'- gUCGUGGaCACGCCCGCcGGCGCCGc -3'
miRNA:   3'- aAGUACCaGUGCGGGCGuCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 132582 0.78 0.185852
Target:  5'- -aCGUcGG-CGCGCCCGCGGACGCCc- -3'
miRNA:   3'- aaGUA-CCaGUGCGGGCGUCUGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 63007 0.76 0.243367
Target:  5'- cUCGgcGGcCGCGCCCGCgcGGGCGCCGGc -3'
miRNA:   3'- aAGUa-CCaGUGCGGGCG--UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 95130 0.75 0.280583
Target:  5'- cUCAUGGcUCGCGUCCGCcugcuGGuCGCCGGg -3'
miRNA:   3'- aAGUACC-AGUGCGGGCG-----UCuGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 44304 0.74 0.30782
Target:  5'- -cCAgGGcCGCuGCCCGCGGGCGCCGc -3'
miRNA:   3'- aaGUaCCaGUG-CGGGCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 117212 0.74 0.314938
Target:  5'- ----cGG-CGCGCCCGCugccuGGGCGCCGAg -3'
miRNA:   3'- aaguaCCaGUGCGGGCG-----UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 90066 0.73 0.384528
Target:  5'- ----cGG-CGC-CCCGCGGGCGCCGAg -3'
miRNA:   3'- aaguaCCaGUGcGGGCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 28856 0.72 0.392024
Target:  5'- gUCGUGGcCGcCGCCCuugaggcugcggcGCGGACGCCGc -3'
miRNA:   3'- aAGUACCaGU-GCGGG-------------CGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 46115 0.72 0.427353
Target:  5'- -cCGUGGUcCGCGUCCaGCAGGuCGCCGc -3'
miRNA:   3'- aaGUACCA-GUGCGGG-CGUCU-GCGGCu -5'
23773 5' -58.7 NC_005261.1 + 120591 0.72 0.436251
Target:  5'- gUCGUGGcCGuCGCCUGCGGccucgGCGCCGu -3'
miRNA:   3'- aAGUACCaGU-GCGGGCGUC-----UGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 68072 0.72 0.436251
Target:  5'- --gGUGGUCucgguCGCCCGCGGGgGCgGGg -3'
miRNA:   3'- aagUACCAGu----GCGGGCGUCUgCGgCU- -5'
23773 5' -58.7 NC_005261.1 + 17889 0.71 0.454364
Target:  5'- -gCAUGGUCAagaUGCCCuugGCGacGGCGCCGAu -3'
miRNA:   3'- aaGUACCAGU---GCGGG---CGU--CUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 87417 0.71 0.472876
Target:  5'- gUCGacgGG-CGCGCCgGCgaAGGCGCCGAa -3'
miRNA:   3'- aAGUa--CCaGUGCGGgCG--UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 89188 0.71 0.482274
Target:  5'- ---cUGGagC-CGCUCGCGGGCGCCGAg -3'
miRNA:   3'- aaguACCa-GuGCGGGCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 48054 0.7 0.510987
Target:  5'- ----cGGUCgGgGCCCGCGGcccACGCCGAg -3'
miRNA:   3'- aaguaCCAG-UgCGGGCGUC---UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 122331 0.7 0.520717
Target:  5'- gUCA-GGUgGCGCUCGCAGAgcuCGCCu- -3'
miRNA:   3'- aAGUaCCAgUGCGGGCGUCU---GCGGcu -5'
23773 5' -58.7 NC_005261.1 + 104152 0.7 0.530518
Target:  5'- ----aGGUCGgccaccgcgcCGUCCGCGGGCGCCGc -3'
miRNA:   3'- aaguaCCAGU----------GCGGGCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 127317 0.7 0.550315
Target:  5'- --gGUGGggcccugC-CGCCCGCGGGgGCCGGa -3'
miRNA:   3'- aagUACCa------GuGCGGGCGUCUgCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 114356 0.7 0.550315
Target:  5'- -gCGUGGcCGCGgCCGaguCGGugGCCGAg -3'
miRNA:   3'- aaGUACCaGUGCgGGC---GUCugCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 116168 0.69 0.560299
Target:  5'- ----cGGUCGCGgCCGCGuccccGACGCCGc -3'
miRNA:   3'- aaguaCCAGUGCgGGCGU-----CUGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.