miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 103428 0.66 0.760891
Target:  5'- -cCGCGGccacgcGCGcGCGCGCCucgcGGUCGGc -3'
miRNA:   3'- uaGCGCC------UGUuCGCGCGGcu--CCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 41885 0.66 0.760891
Target:  5'- gAUCGCGGcguACucGCGCaGCgUGGGGUUGGg -3'
miRNA:   3'- -UAGCGCC---UGuuCGCG-CG-GCUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 107264 0.66 0.760891
Target:  5'- -gCGCGGGCAcgggcgGGCGCGCaucAGG-CGGc -3'
miRNA:   3'- uaGCGCCUGU------UCGCGCGgc-UCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 12303 0.66 0.760891
Target:  5'- -cCGCGGGCAcgGGCGCguaGCCGGcGGgcgCGc -3'
miRNA:   3'- uaGCGCCUGU--UCGCG---CGGCU-CCa--GCu -5'
23775 3' -59.5 NC_005261.1 + 68701 0.66 0.760891
Target:  5'- -gCGCGGACGacGGCgGCGCCGGcccucacgcGG-CGGg -3'
miRNA:   3'- uaGCGCCUGU--UCG-CGCGGCU---------CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 47114 0.66 0.760891
Target:  5'- -cCGUgaGGACGuGCGCGUCcAGGUCGu -3'
miRNA:   3'- uaGCG--CCUGUuCGCGCGGcUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 72688 0.66 0.760891
Target:  5'- -gCGCGaACcGGCGCGCC-AGGUCc- -3'
miRNA:   3'- uaGCGCcUGuUCGCGCGGcUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 98671 0.66 0.760891
Target:  5'- -gCGaGGGCGGGCucCGCCGGGGcCGGa -3'
miRNA:   3'- uaGCgCCUGUUCGc-GCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 80667 0.66 0.760891
Target:  5'- cUCGCGGu---GCGCGCCGucG-CGGa -3'
miRNA:   3'- uAGCGCCuguuCGCGCGGCucCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 15047 0.66 0.760891
Target:  5'- --aGCGGGgGGGgucgggguCGCGgCGGGGUCGGg -3'
miRNA:   3'- uagCGCCUgUUC--------GCGCgGCUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 56319 0.66 0.759954
Target:  5'- -cUGCuacuGACGAgccuggcGCGCGCCGAGGcCGGg -3'
miRNA:   3'- uaGCGc---CUGUU-------CGCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 73720 0.66 0.75147
Target:  5'- -cCGCGGuCGGcgugcgcgcuuGCGCGCgGGGGUCc- -3'
miRNA:   3'- uaGCGCCuGUU-----------CGCGCGgCUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 88210 0.66 0.75147
Target:  5'- -cCGCGccGGCAAGCGCgcgGCCGA-GUCGu -3'
miRNA:   3'- uaGCGC--CUGUUCGCG---CGGCUcCAGCu -5'
23775 3' -59.5 NC_005261.1 + 67055 0.66 0.75147
Target:  5'- -cCGUGuaGGCGGGCGCGCgCGGGGgcucgcUCGGg -3'
miRNA:   3'- uaGCGC--CUGUUCGCGCG-GCUCC------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 33046 0.66 0.75147
Target:  5'- -cCGCGGAgggcCAGGacucgGCGCCGGGGacgCGGc -3'
miRNA:   3'- uaGCGCCU----GUUCg----CGCGGCUCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 59101 0.66 0.75147
Target:  5'- cUCGCGcucGCAGGCGCGCgCGAGcUCc- -3'
miRNA:   3'- uAGCGCc--UGUUCGCGCG-GCUCcAGcu -5'
23775 3' -59.5 NC_005261.1 + 52680 0.66 0.75147
Target:  5'- --aGCGGGCccugcucgcGGGCGCGCCGcugccGGcCGAu -3'
miRNA:   3'- uagCGCCUG---------UUCGCGCGGCu----CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 75502 0.66 0.741947
Target:  5'- -gCGCgGGGCGcuggaGGCGCacGCCGuGGUCGc -3'
miRNA:   3'- uaGCG-CCUGU-----UCGCG--CGGCuCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 127831 0.66 0.741947
Target:  5'- cUCGCGGccGCGAGCaGCGgaCGGGG-CGGu -3'
miRNA:   3'- uAGCGCC--UGUUCG-CGCg-GCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 105490 0.66 0.741947
Target:  5'- -gCGCGGGCcccGAGCcCGCCGAGa-CGAa -3'
miRNA:   3'- uaGCGCCUG---UUCGcGCGGCUCcaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.