miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 30162 0.66 0.721657
Target:  5'- --aGCGGcgccgcgcccgccGCGcuGCGCGCCGAGG-CGGc -3'
miRNA:   3'- uagCGCC-------------UGUu-CGCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 52680 0.66 0.75147
Target:  5'- --aGCGGGCccugcucgcGGGCGCGCCGcugccGGcCGAu -3'
miRNA:   3'- uagCGCCUG---------UUCGCGCGGCu----CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 105490 0.66 0.741947
Target:  5'- -gCGCGGGCcccGAGCcCGCCGAGa-CGAa -3'
miRNA:   3'- uaGCGCCUG---UUCGcGCGGCUCcaGCU- -5'
23775 3' -59.5 NC_005261.1 + 105123 0.66 0.732331
Target:  5'- -gCGCGGGCGcgggccgccGGCGCGCgcAGGUCc- -3'
miRNA:   3'- uaGCGCCUGU---------UCGCGCGgcUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 53871 0.66 0.732331
Target:  5'- -gCGCGG-CGcGCGCGCUGucGaGUCGAa -3'
miRNA:   3'- uaGCGCCuGUuCGCGCGGCu-C-CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 54638 0.66 0.732331
Target:  5'- -cCGCGuGAUGAGCGCGcCCGcGGUguuaaCGAa -3'
miRNA:   3'- uaGCGC-CUGUUCGCGC-GGCuCCA-----GCU- -5'
23775 3' -59.5 NC_005261.1 + 118721 0.66 0.712856
Target:  5'- cGUCGCGGGCGGGCacgGCGUCGcGcUCGc -3'
miRNA:   3'- -UAGCGCCUGUUCG---CGCGGCuCcAGCu -5'
23775 3' -59.5 NC_005261.1 + 103428 0.66 0.760891
Target:  5'- -cCGCGGccacgcGCGcGCGCGCCucgcGGUCGGc -3'
miRNA:   3'- uaGCGCC------UGUuCGCGCGGcu--CCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 3346 0.66 0.732331
Target:  5'- -cCGCGG-CGcccGGCGCGCCGgccuucAGGgccgCGAg -3'
miRNA:   3'- uaGCGCCuGU---UCGCGCGGC------UCCa---GCU- -5'
23775 3' -59.5 NC_005261.1 + 100041 0.66 0.722631
Target:  5'- -cCGCGGGCGucagcucgAGCGCGCCGccGcCGc -3'
miRNA:   3'- uaGCGCCUGU--------UCGCGCGGCucCaGCu -5'
23775 3' -59.5 NC_005261.1 + 15839 0.66 0.711875
Target:  5'- -cCGCaucGCGAGCGCGCuagaggaCGAGGUCGc -3'
miRNA:   3'- uaGCGcc-UGUUCGCGCG-------GCUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 75192 0.66 0.732331
Target:  5'- uGUCGCGGACcuucauGGCG-GCCGcGGUggCGGc -3'
miRNA:   3'- -UAGCGCCUGu-----UCGCgCGGCuCCA--GCU- -5'
23775 3' -59.5 NC_005261.1 + 80884 0.66 0.722631
Target:  5'- -gCGCGGGCuucAGCgGCGCCucccaGGGGUCc- -3'
miRNA:   3'- uaGCGCCUGu--UCG-CGCGG-----CUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 110239 0.66 0.712856
Target:  5'- -gCGUGGGCGgcgcGGCGC-CCGGGGggcugCGGg -3'
miRNA:   3'- uaGCGCCUGU----UCGCGcGGCUCCa----GCU- -5'
23775 3' -59.5 NC_005261.1 + 44251 0.66 0.731365
Target:  5'- -gCGCGGcCGacgccgcGGCGCGCgGGGGggCGGg -3'
miRNA:   3'- uaGCGCCuGU-------UCGCGCGgCUCCa-GCU- -5'
23775 3' -59.5 NC_005261.1 + 5826 0.66 0.712856
Target:  5'- --gGCGGcCGAuGCGCGCCG-GGUUa- -3'
miRNA:   3'- uagCGCCuGUU-CGCGCGGCuCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 75502 0.66 0.741947
Target:  5'- -gCGCgGGGCGcuggaGGCGCacGCCGuGGUCGc -3'
miRNA:   3'- uaGCG-CCUGU-----UCGCG--CGGCuCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 87415 0.66 0.732331
Target:  5'- -cCGUcGACGGGCGCGCCGgcgaAGGcgcCGAa -3'
miRNA:   3'- uaGCGcCUGUUCGCGCGGC----UCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 127831 0.66 0.741947
Target:  5'- cUCGCGGccGCGAGCaGCGgaCGGGG-CGGu -3'
miRNA:   3'- uAGCGCC--UGUUCG-CGCg-GCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 6225 0.66 0.732331
Target:  5'- cUgGCGGucCAGGUGCGCCcGGGGagGGc -3'
miRNA:   3'- uAgCGCCu-GUUCGCGCGG-CUCCagCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.