miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 1143 0.68 0.616862
Target:  5'- -aCGCGGACGAggagagcacuuccacGCGCGCCGGcccgcgccgcGGcCGGg -3'
miRNA:   3'- uaGCGCCUGUU---------------CGCGCGGCU----------CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 2422 0.69 0.550028
Target:  5'- -gCGCGGcgGCGGGCcgcgaucucggccaGCGCCucGGGGUCGAa -3'
miRNA:   3'- uaGCGCC--UGUUCG--------------CGCGG--CUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 3346 0.66 0.732331
Target:  5'- -cCGCGG-CGcccGGCGCGCCGgccuucAGGgccgCGAg -3'
miRNA:   3'- uaGCGCCuGU---UCGCGCGGC------UCCa---GCU- -5'
23775 3' -59.5 NC_005261.1 + 3453 0.69 0.552982
Target:  5'- -gCGCGGGCcgcCGCGCCGcGcGUCGAg -3'
miRNA:   3'- uaGCGCCUGuucGCGCGGCuC-CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 5572 0.68 0.592757
Target:  5'- --gGCGGAgaUggGgGCGCCGAGGgcgcccgccUCGAg -3'
miRNA:   3'- uagCGCCU--GuuCgCGCGGCUCC---------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 5826 0.66 0.712856
Target:  5'- --gGCGGcCGAuGCGCGCCG-GGUUa- -3'
miRNA:   3'- uagCGCCuGUU-CGCGCGGCuCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 6225 0.66 0.732331
Target:  5'- cUgGCGGucCAGGUGCGCCcGGGGagGGc -3'
miRNA:   3'- uAgCGCCu-GUUCGCGCGG-CUCCagCU- -5'
23775 3' -59.5 NC_005261.1 + 11475 0.67 0.653107
Target:  5'- -gCGCGGAgGGGCGgGgCGGGGgugccggcUCGAg -3'
miRNA:   3'- uaGCGCCUgUUCGCgCgGCUCC--------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 12303 0.66 0.760891
Target:  5'- -cCGCGGGCAcgGGCGCguaGCCGGcGGgcgCGc -3'
miRNA:   3'- uaGCGCCUGU--UCGCG---CGGCU-CCa--GCu -5'
23775 3' -59.5 NC_005261.1 + 12727 0.68 0.621895
Target:  5'- -gCGCGGGCccgccggcccccuGGGCGgGCCcggcGAGGUCGu -3'
miRNA:   3'- uaGCGCCUG-------------UUCGCgCGG----CUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 13493 0.7 0.504478
Target:  5'- -aUGCGGACGAGCGCGCa---GUCGc -3'
miRNA:   3'- uaGCGCCUGUUCGCGCGgcucCAGCu -5'
23775 3' -59.5 NC_005261.1 + 13689 0.69 0.533385
Target:  5'- -gCGCGGGCGuggggcggGGCGgGCUGGGGgCGGg -3'
miRNA:   3'- uaGCGCCUGU--------UCGCgCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 14957 0.67 0.703014
Target:  5'- --aGCGaGCGGGCGUGCCuGGGG-CGAc -3'
miRNA:   3'- uagCGCcUGUUCGCGCGG-CUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 15047 0.66 0.760891
Target:  5'- --aGCGGGgGGGgucgggguCGCGgCGGGGUCGGg -3'
miRNA:   3'- uagCGCCUgUUC--------GCGCgGCUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 15839 0.66 0.711875
Target:  5'- -cCGCaucGCGAGCGCGCuagaggaCGAGGUCGc -3'
miRNA:   3'- uaGCGcc-UGUUCGCGCG-------GCUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 17124 0.74 0.305075
Target:  5'- uAUCGCGGcgGCGGGUaCGCCGgcGGGUCGAc -3'
miRNA:   3'- -UAGCGCC--UGUUCGcGCGGC--UCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 17469 0.74 0.284841
Target:  5'- -cUGCGGGCAgacgcgGGCGCGCCGGGGg--- -3'
miRNA:   3'- uaGCGCCUGU------UCGCGCGGCUCCagcu -5'
23775 3' -59.5 NC_005261.1 + 18970 0.71 0.457902
Target:  5'- aGUgGCGGugGGGCGCGCaCGAaagucaaaGGUCa- -3'
miRNA:   3'- -UAgCGCCugUUCGCGCG-GCU--------CCAGcu -5'
23775 3' -59.5 NC_005261.1 + 21485 0.67 0.663154
Target:  5'- uUC-CGGACGAGUGCuaCGAGGaUGAg -3'
miRNA:   3'- uAGcGCCUGUUCGCGcgGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 21699 0.73 0.326393
Target:  5'- cGUCGCGGGCGAGCGCuucaCgGAGGacugcuUCGAg -3'
miRNA:   3'- -UAGCGCCUGUUCGCGc---GgCUCC------AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.