miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 5' -50.6 NC_005261.1 + 2765 0.67 0.980546
Target:  5'- -gGCGGg--CCuc-GAGGccCGCCCCCg -3'
miRNA:   3'- gaCGCCaaaGGuuaUUUCu-GCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 68732 0.68 0.97823
Target:  5'- -gGCGGgcgCCGGcggGAAGaaGCGCCCgCCg -3'
miRNA:   3'- gaCGCCaaaGGUUa--UUUC--UGCGGG-GG- -5'
23776 5' -50.6 NC_005261.1 + 130757 0.68 0.97823
Target:  5'- gCUGCuGGUaaCCAcgGAGcagcuGGCGCCCCg -3'
miRNA:   3'- -GACG-CCAaaGGUuaUUU-----CUGCGGGGg -5'
23776 5' -50.6 NC_005261.1 + 36740 0.68 0.97823
Target:  5'- -gGCGGUcagcuacCCAGgccagcuGGCGCCCCUg -3'
miRNA:   3'- gaCGCCAaa-----GGUUauuu---CUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 24033 0.68 0.975716
Target:  5'- -cGCGGggUUCgGGUGGgcguccuuggguGGGCGCCCgCCc -3'
miRNA:   3'- gaCGCCa-AAGgUUAUU------------UCUGCGGG-GG- -5'
23776 5' -50.6 NC_005261.1 + 84 0.68 0.975716
Target:  5'- -gGCGGggUgCGGggc--GCGCCCCCg -3'
miRNA:   3'- gaCGCCaaAgGUUauuucUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 137767 0.68 0.975716
Target:  5'- -gGCGGggUgCGGggc--GCGCCCCCg -3'
miRNA:   3'- gaCGCCaaAgGUUauuucUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 43390 0.68 0.972997
Target:  5'- -cGCGGUgccggcaccgUCCAGgcgccGGGGGCGgCCUCCg -3'
miRNA:   3'- gaCGCCAa---------AGGUUa----UUUCUGC-GGGGG- -5'
23776 5' -50.6 NC_005261.1 + 68837 0.68 0.970063
Target:  5'- -gGCGGcccccccgUCCcgcGGGGACGCCCUCu -3'
miRNA:   3'- gaCGCCaa------AGGuuaUUUCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 4951 0.68 0.966909
Target:  5'- -cGCGGc--CC-----AGGCGCCCCCg -3'
miRNA:   3'- gaCGCCaaaGGuuauuUCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 33856 0.69 0.963527
Target:  5'- -gGCGGg--CCGG-GAGGGC-CCCCCg -3'
miRNA:   3'- gaCGCCaaaGGUUaUUUCUGcGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 101364 0.69 0.963527
Target:  5'- -cGCGGccacgUCCAGcuccGGCGCCUCCu -3'
miRNA:   3'- gaCGCCaa---AGGUUauuuCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 12576 0.69 0.963527
Target:  5'- -cGCGGgg-CCGAgAGGGGCGCCUa- -3'
miRNA:   3'- gaCGCCaaaGGUUaUUUCUGCGGGgg -5'
23776 5' -50.6 NC_005261.1 + 125073 0.69 0.963176
Target:  5'- -cGCaGGUgggCCGucaaGUAGucuugcgGGGCGCCCCCu -3'
miRNA:   3'- gaCG-CCAaa-GGU----UAUU-------UCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 115826 0.69 0.961385
Target:  5'- -cGCGGUgcgCCAGcuuGGGCgcguuggcccgcgcgGCCCCCg -3'
miRNA:   3'- gaCGCCAaa-GGUUauuUCUG---------------CGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 129224 0.69 0.959911
Target:  5'- gUGCGGcg-CCuc--AAGugGCUCCCg -3'
miRNA:   3'- gACGCCaaaGGuuauUUCugCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 35069 0.69 0.959536
Target:  5'- -gGCGGUcUCC-------GCGCCCCCu -3'
miRNA:   3'- gaCGCCAaAGGuuauuucUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 16411 0.69 0.956054
Target:  5'- -gGCGGUgcg----GGAGAgGCCCCCu -3'
miRNA:   3'- gaCGCCAaagguuaUUUCUgCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 33620 0.69 0.956054
Target:  5'- -gGCGGgg-CCc--GGGGGCGCgCCCCg -3'
miRNA:   3'- gaCGCCaaaGGuuaUUUCUGCG-GGGG- -5'
23776 5' -50.6 NC_005261.1 + 686 0.69 0.951953
Target:  5'- -cGCGGacgcUCCGcauc-GGCGCCCCCc -3'
miRNA:   3'- gaCGCCaa--AGGUuauuuCUGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.