miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 5' -50.6 NC_005261.1 + 4572 0.78 0.561499
Target:  5'- -cGCGGgcgggUCCGGc-GGGGCGCCCCCc -3'
miRNA:   3'- gaCGCCaa---AGGUUauUUCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 98434 0.74 0.770402
Target:  5'- cCUGCGGacccgggCCGGUAGGcGGCGCCCgCa -3'
miRNA:   3'- -GACGCCaaa----GGUUAUUU-CUGCGGGgG- -5'
23776 5' -50.6 NC_005261.1 + 74422 0.74 0.789693
Target:  5'- -gGCGGgagggCCGAggAGAG-CGCCCCCc -3'
miRNA:   3'- gaCGCCaaa--GGUUa-UUUCuGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 136809 0.73 0.808369
Target:  5'- -gGCGGgcucguagCC-GUAGAcGGCGCCCCCg -3'
miRNA:   3'- gaCGCCaaa-----GGuUAUUU-CUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 130265 0.73 0.826353
Target:  5'- aCUGCGGggcgUCCcgc----GCGCCCCCg -3'
miRNA:   3'- -GACGCCaa--AGGuuauuucUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 78838 0.72 0.867818
Target:  5'- gCUGCGGUacgCCGGc---GGCGCCCgCCg -3'
miRNA:   3'- -GACGCCAaa-GGUUauuuCUGCGGG-GG- -5'
23776 5' -50.6 NC_005261.1 + 88089 0.71 0.896912
Target:  5'- aCUGCGaa--CgGGgcGAGGCGCCCCCg -3'
miRNA:   3'- -GACGCcaaaGgUUauUUCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 23672 0.71 0.903571
Target:  5'- -gGuCGGg--CCGGUGAGcGAgCGCCCCCg -3'
miRNA:   3'- gaC-GCCaaaGGUUAUUU-CU-GCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 46044 0.71 0.903571
Target:  5'- -cGCGGUagagggUCCAGggcagcgggAAGGGCGCCgCCu -3'
miRNA:   3'- gaCGCCAa-----AGGUUa--------UUUCUGCGGgGG- -5'
23776 5' -50.6 NC_005261.1 + 134442 0.71 0.916127
Target:  5'- -cGCGGggcugCUggUGAAGGCGCUCUa -3'
miRNA:   3'- gaCGCCaaa--GGuuAUUUCUGCGGGGg -5'
23776 5' -50.6 NC_005261.1 + 46610 0.7 0.922019
Target:  5'- aCUGCG---UCCcc-GAAGGCGCCCCa -3'
miRNA:   3'- -GACGCcaaAGGuuaUUUCUGCGGGGg -5'
23776 5' -50.6 NC_005261.1 + 121657 0.7 0.927653
Target:  5'- -cGCGGgcugUCCGcgucggcguagGUGuAGGCGCCCuCCa -3'
miRNA:   3'- gaCGCCaa--AGGU-----------UAUuUCUGCGGG-GG- -5'
23776 5' -50.6 NC_005261.1 + 28134 0.7 0.933027
Target:  5'- -gGCGGgcgCCcuc---GGCGCCCCCa -3'
miRNA:   3'- gaCGCCaaaGGuuauuuCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 60261 0.7 0.937643
Target:  5'- -aGCGGcggCC-GUGAAGAggcgcccggggucCGCCCCCg -3'
miRNA:   3'- gaCGCCaaaGGuUAUUUCU-------------GCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 15347 0.7 0.938143
Target:  5'- -cGCGG---CCAGgggAAAGACGUCCCg -3'
miRNA:   3'- gaCGCCaaaGGUUa--UUUCUGCGGGGg -5'
23776 5' -50.6 NC_005261.1 + 9665 0.7 0.943001
Target:  5'- -gGCGGgcgcCCAcccAAGGACGCCCaCCc -3'
miRNA:   3'- gaCGCCaaa-GGUua-UUUCUGCGGG-GG- -5'
23776 5' -50.6 NC_005261.1 + 109875 0.69 0.947603
Target:  5'- -aGCGGggcCCGcgGGcGGGCGCCCCg -3'
miRNA:   3'- gaCGCCaaaGGUuaUU-UCUGCGGGGg -5'
23776 5' -50.6 NC_005261.1 + 686 0.69 0.951953
Target:  5'- -cGCGGacgcUCCGcauc-GGCGCCCCCc -3'
miRNA:   3'- gaCGCCaa--AGGUuauuuCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 33620 0.69 0.956054
Target:  5'- -gGCGGgg-CCc--GGGGGCGCgCCCCg -3'
miRNA:   3'- gaCGCCaaaGGuuaUUUCUGCG-GGGG- -5'
23776 5' -50.6 NC_005261.1 + 16411 0.69 0.956054
Target:  5'- -gGCGGUgcg----GGAGAgGCCCCCu -3'
miRNA:   3'- gaCGCCAaagguuaUUUCUgCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.