miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 5' -50.6 NC_005261.1 + 84 0.68 0.975716
Target:  5'- -gGCGGggUgCGGggc--GCGCCCCCg -3'
miRNA:   3'- gaCGCCaaAgGUUauuucUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 686 0.69 0.951953
Target:  5'- -cGCGGacgcUCCGcauc-GGCGCCCCCc -3'
miRNA:   3'- gaCGCCaa--AGGUuauuuCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 2765 0.67 0.980546
Target:  5'- -gGCGGg--CCuc-GAGGccCGCCCCCg -3'
miRNA:   3'- gaCGCCaaaGGuuaUUUCu-GCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 4059 0.67 0.980546
Target:  5'- uCUGCGcGg--CCAu----GGCGUCCCCg -3'
miRNA:   3'- -GACGC-CaaaGGUuauuuCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 4526 0.66 0.991976
Target:  5'- -cGCGGgcgCCGcggcGAGGGCGCCgggCCCu -3'
miRNA:   3'- gaCGCCaaaGGUua--UUUCUGCGG---GGG- -5'
23776 5' -50.6 NC_005261.1 + 4572 0.78 0.561499
Target:  5'- -cGCGGgcgggUCCGGc-GGGGCGCCCCCc -3'
miRNA:   3'- gaCGCCaa---AGGUUauUUCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 4951 0.68 0.966909
Target:  5'- -cGCGGc--CC-----AGGCGCCCCCg -3'
miRNA:   3'- gaCGCCaaaGGuuauuUCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 4972 0.66 0.99128
Target:  5'- -cGCGGcgUCCucu-GGGGCccggagggcgccgagGCCCCCg -3'
miRNA:   3'- gaCGCCaaAGGuuauUUCUG---------------CGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 5579 0.67 0.986396
Target:  5'- aUGgGGgcgCCGA---GGGCGCCCgCCu -3'
miRNA:   3'- gACgCCaaaGGUUauuUCUGCGGG-GG- -5'
23776 5' -50.6 NC_005261.1 + 6662 0.66 0.99128
Target:  5'- aCUGgGGcUUCCugcuucc-CGCCCCCa -3'
miRNA:   3'- -GACgCCaAAGGuuauuucuGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 9665 0.7 0.943001
Target:  5'- -gGCGGgcgcCCAcccAAGGACGCCCaCCc -3'
miRNA:   3'- gaCGCCaaa-GGUua-UUUCUGCGGG-GG- -5'
23776 5' -50.6 NC_005261.1 + 12576 0.69 0.963527
Target:  5'- -cGCGGgg-CCGAgAGGGGCGCCUa- -3'
miRNA:   3'- gaCGCCaaaGGUUaUUUCUGCGGGgg -5'
23776 5' -50.6 NC_005261.1 + 14131 0.66 0.989332
Target:  5'- -gGCGGUgggCAGUcgcucgcGAGGACGCUCCa -3'
miRNA:   3'- gaCGCCAaagGUUA-------UUUCUGCGGGGg -5'
23776 5' -50.6 NC_005261.1 + 15347 0.7 0.938143
Target:  5'- -cGCGG---CCAGgggAAAGACGUCCCg -3'
miRNA:   3'- gaCGCCaaaGGUUa--UUUCUGCGGGGg -5'
23776 5' -50.6 NC_005261.1 + 16411 0.69 0.956054
Target:  5'- -gGCGGUgcg----GGAGAgGCCCCCu -3'
miRNA:   3'- gaCGCCAaagguuaUUUCUgCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 18014 0.66 0.991976
Target:  5'- cCUGCGGg-UCCccgcuAG-CGCUCCCg -3'
miRNA:   3'- -GACGCCaaAGGuuauuUCuGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 20506 0.66 0.993037
Target:  5'- -aGCGGg--CCGGcUAGGGACGCCg-- -3'
miRNA:   3'- gaCGCCaaaGGUU-AUUUCUGCGGggg -5'
23776 5' -50.6 NC_005261.1 + 23430 0.66 0.994822
Target:  5'- gCUGCGcGUcggggcgCCAGUccucagggcaGAAGGCGCCaggCCCg -3'
miRNA:   3'- -GACGC-CAaa-----GGUUA----------UUUCUGCGG---GGG- -5'
23776 5' -50.6 NC_005261.1 + 23672 0.71 0.903571
Target:  5'- -gGuCGGg--CCGGUGAGcGAgCGCCCCCg -3'
miRNA:   3'- gaC-GCCaaaGGUUAUUU-CU-GCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 24033 0.68 0.975716
Target:  5'- -cGCGGggUUCgGGUGGgcguccuuggguGGGCGCCCgCCc -3'
miRNA:   3'- gaCGCCa-AAGgUUAUU------------UCUGCGGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.