miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 117369 0.66 0.622238
Target:  5'- aGGCCGCCCUCcuggaGGCgCGCUGcUUcGGCGGg -3'
miRNA:   3'- -CCGGUGGGGG-----UCG-GCGGCcAA-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 12184 0.66 0.602626
Target:  5'- cGCCGCCgCCAccaugcagcgccGCCGCCGG-UGcCGc -3'
miRNA:   3'- cCGGUGGgGGU------------CGGCGGCCaACuGCu -5'
23777 5' -62.2 NC_005261.1 + 24110 0.66 0.632057
Target:  5'- -cCCACCCCgGGCCcgaGgCGGggGugGGg -3'
miRNA:   3'- ccGGUGGGGgUCGG---CgGCCaaCugCU- -5'
23777 5' -62.2 NC_005261.1 + 49189 0.66 0.632057
Target:  5'- cGGCCagGCCCUCGGCCGacagCGag-GGCGGg -3'
miRNA:   3'- -CCGG--UGGGGGUCGGCg---GCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 68318 0.66 0.612425
Target:  5'- cGGCCGCUUCgAcgUGCCGGUcGGCGAc -3'
miRNA:   3'- -CCGGUGGGGgUcgGCGGCCAaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 33456 0.66 0.622238
Target:  5'- aGCCGCCgCCgCAGCCGCCGccgcaGcCGGg -3'
miRNA:   3'- cCGGUGG-GG-GUCGGCGGCcaa--CuGCU- -5'
23777 5' -62.2 NC_005261.1 + 43818 0.66 0.632057
Target:  5'- gGGCgCGCCCUCcguggagaAGCUGCuCGGcgagGGCGAg -3'
miRNA:   3'- -CCG-GUGGGGG--------UCGGCG-GCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 1494 0.66 0.612425
Target:  5'- aGGCCACCgCC-GCgGCCGGcagcucgucgGGCGc -3'
miRNA:   3'- -CCGGUGGgGGuCGgCGGCCaa--------CUGCu -5'
23777 5' -62.2 NC_005261.1 + 13072 0.66 0.632057
Target:  5'- gGGCgCGuCCgCCGGcCCGUCGGcgGGCGGc -3'
miRNA:   3'- -CCG-GU-GGgGGUC-GGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 1389 0.66 0.641876
Target:  5'- aGGCCACgCCgggcgccgCGGCCGCgGcGgcGGCGGg -3'
miRNA:   3'- -CCGGUGgGG--------GUCGGCGgC-CaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 128 0.66 0.632057
Target:  5'- cGCCGCCCCUGGUgcuCGCgGGgcUGGCa- -3'
miRNA:   3'- cCGGUGGGGGUCG---GCGgCCa-ACUGcu -5'
23777 5' -62.2 NC_005261.1 + 28599 0.66 0.612425
Target:  5'- gGGCCGCCCgcgCCgAGCUGgCGGagcugUGGCGc -3'
miRNA:   3'- -CCGGUGGG---GG-UCGGCgGCCa----ACUGCu -5'
23777 5' -62.2 NC_005261.1 + 67311 0.66 0.632057
Target:  5'- cGCCGCCgUCGGCCGCCGcc--GCGc -3'
miRNA:   3'- cCGGUGGgGGUCGGCGGCcaacUGCu -5'
23777 5' -62.2 NC_005261.1 + 88341 0.66 0.641876
Target:  5'- uGGCgGCgCCCC-GCCGCCGc--GGCGu -3'
miRNA:   3'- -CCGgUG-GGGGuCGGCGGCcaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 138013 0.66 0.612425
Target:  5'- cGGCgGCCCgCAGCCcgGCgCGGcccGGCGGc -3'
miRNA:   3'- -CCGgUGGGgGUCGG--CG-GCCaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 72881 0.66 0.602626
Target:  5'- aGGuCCGCCCC--GCCGCCGGggua-GAg -3'
miRNA:   3'- -CC-GGUGGGGguCGGCGGCCaacugCU- -5'
23777 5' -62.2 NC_005261.1 + 23611 0.66 0.632057
Target:  5'- uGUCGCCgCC-GCUGCCGGggcgcGGCGGg -3'
miRNA:   3'- cCGGUGGgGGuCGGCGGCCaa---CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 118347 0.66 0.641876
Target:  5'- gGGCUGCuCCUCGGCCucucgGCCGGgcgcuggGGCGc -3'
miRNA:   3'- -CCGGUG-GGGGUCGG-----CGGCCaa-----CUGCu -5'
23777 5' -62.2 NC_005261.1 + 134713 0.66 0.622238
Target:  5'- cGGCgCGCCcagaCCCGGCCGggacCCGGacucGGCGAc -3'
miRNA:   3'- -CCG-GUGG----GGGUCGGC----GGCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 9870 0.66 0.620274
Target:  5'- cGGCCugCCCCGGCgagcccacccuaGCCGGcccgcccggGGCa- -3'
miRNA:   3'- -CCGGugGGGGUCGg-----------CGGCCaa-------CUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.