miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 10544 0.66 0.612425
Target:  5'- uGUCGCCCCCGGCgCGCCuGccgGGCc- -3'
miRNA:   3'- cCGGUGGGGGUCG-GCGGcCaa-CUGcu -5'
23777 5' -62.2 NC_005261.1 + 116054 0.66 0.602626
Target:  5'- uGGCCuugGCgCCCCgcguGGCgCGCCGGUccccGugGAu -3'
miRNA:   3'- -CCGG---UG-GGGG----UCG-GCGGCCAa---CugCU- -5'
23777 5' -62.2 NC_005261.1 + 103575 0.66 0.602626
Target:  5'- cGCCGCCgCCCGcgccgucgcucGCCGCCGuGgccgcGGCGGc -3'
miRNA:   3'- cCGGUGG-GGGU-----------CGGCGGC-Caa---CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 62670 0.66 0.612425
Target:  5'- aGGCCAgcgccacguCCgCCAGCugcacgCGCCGGcgcagcgUGGCGAg -3'
miRNA:   3'- -CCGGU---------GGgGGUCG------GCGGCCa------ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 91134 0.66 0.612425
Target:  5'- cGGCCGaggCCUCAGCCguGCCGcccGGCGAg -3'
miRNA:   3'- -CCGGUg--GGGGUCGG--CGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 68318 0.66 0.612425
Target:  5'- cGGCCGCUUCgAcgUGCCGGUcGGCGAc -3'
miRNA:   3'- -CCGGUGGGGgUcgGCGGCCAaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 107400 0.66 0.612425
Target:  5'- cGGCCAgagCCCGGCCGCCaGGgc--CGAg -3'
miRNA:   3'- -CCGGUgg-GGGUCGGCGG-CCaacuGCU- -5'
23777 5' -62.2 NC_005261.1 + 9870 0.66 0.620274
Target:  5'- cGGCCugCCCCGGCgagcccacccuaGCCGGcccgcccggGGCa- -3'
miRNA:   3'- -CCGGugGGGGUCGg-----------CGGCCaa-------CUGcu -5'
23777 5' -62.2 NC_005261.1 + 33811 0.66 0.622238
Target:  5'- gGGCUugUCUUugGGCgGCCGGggGGCGc -3'
miRNA:   3'- -CCGGugGGGG--UCGgCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 342 0.66 0.612425
Target:  5'- cGGCgGCCCgCAGCCcgGCgCGGcccGGCGGc -3'
miRNA:   3'- -CCGgUGGGgGUCGG--CG-GCCaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 15934 0.66 0.602626
Target:  5'- gGGCCGgggCCCgGGCaggaGCCGGgggcgagUGGCGGg -3'
miRNA:   3'- -CCGGUg--GGGgUCGg---CGGCCa------ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 82996 0.66 0.611445
Target:  5'- cGGCCGCCucgcgcaCCgAGCCGCCGucgccGGCGc -3'
miRNA:   3'- -CCGGUGG-------GGgUCGGCGGCcaa--CUGCu -5'
23777 5' -62.2 NC_005261.1 + 138013 0.66 0.612425
Target:  5'- cGGCgGCCCgCAGCCcgGCgCGGcccGGCGGc -3'
miRNA:   3'- -CCGgUGGGgGUCGG--CG-GCCaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 127327 0.66 0.651688
Target:  5'- uGCCGCCCgCGGggGCCGGagcGGCGGg -3'
miRNA:   3'- cCGGUGGGgGUCggCGGCCaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 12184 0.66 0.602626
Target:  5'- cGCCGCCgCCAccaugcagcgccGCCGCCGG-UGcCGc -3'
miRNA:   3'- cCGGUGGgGGU------------CGGCGGCCaACuGCu -5'
23777 5' -62.2 NC_005261.1 + 72881 0.66 0.602626
Target:  5'- aGGuCCGCCCC--GCCGCCGGggua-GAg -3'
miRNA:   3'- -CC-GGUGGGGguCGGCGGCCaacugCU- -5'
23777 5' -62.2 NC_005261.1 + 1494 0.66 0.612425
Target:  5'- aGGCCACCgCC-GCgGCCGGcagcucgucgGGCGc -3'
miRNA:   3'- -CCGGUGGgGGuCGgCGGCCaa--------CUGCu -5'
23777 5' -62.2 NC_005261.1 + 34270 0.66 0.602626
Target:  5'- gGGCCcguagACCUCaCGGCgGCCGGcgggGACGc -3'
miRNA:   3'- -CCGG-----UGGGG-GUCGgCGGCCaa--CUGCu -5'
23777 5' -62.2 NC_005261.1 + 28599 0.66 0.612425
Target:  5'- gGGCCGCCCgcgCCgAGCUGgCGGagcugUGGCGc -3'
miRNA:   3'- -CCGGUGGG---GG-UCGGCgGCCa----ACUGCu -5'
23777 5' -62.2 NC_005261.1 + 9927 0.66 0.620274
Target:  5'- cGGCCugCCCCGGCgagcccacccuaGCCGGcccgcccggGGCa- -3'
miRNA:   3'- -CCGGugGGGGUCGg-----------CGGCCaa-------CUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.