miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 127327 0.66 0.651688
Target:  5'- uGCCGCCCgCGGggGCCGGagcGGCGGg -3'
miRNA:   3'- cCGGUGGGgGUCggCGGCCaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 106257 0.75 0.210634
Target:  5'- gGGCCGCCgCCGccgcuGCCGCCGGgcGGCc- -3'
miRNA:   3'- -CCGGUGGgGGU-----CGGCGGCCaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 2776 0.74 0.215162
Target:  5'- aGGcCCGCCCCCGaggggcuGCCGCCGGcgGcCGGg -3'
miRNA:   3'- -CC-GGUGGGGGU-------CGGCGGCCaaCuGCU- -5'
23777 5' -62.2 NC_005261.1 + 32304 0.74 0.220808
Target:  5'- cGCCGCCCCCGccGCCGCCGcGgccGCGGc -3'
miRNA:   3'- cCGGUGGGGGU--CGGCGGC-CaacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 103907 0.74 0.231396
Target:  5'- gGGCCACCCgC-GCCGCCaGGUcgGGCGc -3'
miRNA:   3'- -CCGGUGGGgGuCGGCGG-CCAa-CUGCu -5'
23777 5' -62.2 NC_005261.1 + 76409 0.74 0.231396
Target:  5'- cGGCCGgCCCCGGCgcgugcagagCGCCGGcgccaUGGCGGa -3'
miRNA:   3'- -CCGGUgGGGGUCG----------GCGGCCa----ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 100255 0.74 0.24241
Target:  5'- uGCCAgCCCCCAGUcggcgCGCCGGU-GGCGc -3'
miRNA:   3'- cCGGU-GGGGGUCG-----GCGGCCAaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 100383 0.73 0.248078
Target:  5'- aGGCCGCCUCCAccacGCCGCC-GUUGuccaGCGGg -3'
miRNA:   3'- -CCGGUGGGGGU----CGGCGGcCAAC----UGCU- -5'
23777 5' -62.2 NC_005261.1 + 50011 0.73 0.248078
Target:  5'- cGCCGCCagcgcgcgggcgCCCAGCCGCCGcgcGACGGu -3'
miRNA:   3'- cCGGUGG------------GGGUCGGCGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 20649 0.75 0.186957
Target:  5'- cGCCGCCCgCA-CCGCCGGU-GGCGGc -3'
miRNA:   3'- cCGGUGGGgGUcGGCGGCCAaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 41529 0.76 0.173903
Target:  5'- -uCCACCCCCAGCCccgGCUGGcccgUGGCGGu -3'
miRNA:   3'- ccGGUGGGGGUCGG---CGGCCa---ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 75460 0.76 0.165657
Target:  5'- gGGCCAgUUCCAGgCGCCGGgcGGCGGc -3'
miRNA:   3'- -CCGGUgGGGGUCgGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 50793 0.8 0.088733
Target:  5'- cGGCCGCCCCgGcGCCGCCGccaUGACGGg -3'
miRNA:   3'- -CCGGUGGGGgU-CGGCGGCca-ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 66705 0.79 0.114277
Target:  5'- aGGCCGCgCUCAGCgagCGCCGGUUGAUGc -3'
miRNA:   3'- -CCGGUGgGGGUCG---GCGGCCAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 22670 0.78 0.11718
Target:  5'- gGGCgGCgCCCGaguGCCGCCGGggGACGGg -3'
miRNA:   3'- -CCGgUGgGGGU---CGGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 35109 0.78 0.123193
Target:  5'- cGGCgAgcCCCCCAGCCGCCGGc-GGCGu -3'
miRNA:   3'- -CCGgU--GGGGGUCGGCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 30918 0.78 0.123501
Target:  5'- cGGCCcCUCCCGGCCGCCGGcgcagccccucgggGGCGGg -3'
miRNA:   3'- -CCGGuGGGGGUCGGCGGCCaa------------CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 75561 0.77 0.1395
Target:  5'- cGGCCAUCCCCgGGgCGCUGGgcGGCGGc -3'
miRNA:   3'- -CCGGUGGGGG-UCgGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 42700 0.77 0.150212
Target:  5'- cGCgGCCgCCAGCUGCCGGauccgcUUGACGAu -3'
miRNA:   3'- cCGgUGGgGGUCGGCGGCC------AACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 98774 0.77 0.153946
Target:  5'- uGCCGCCgCCGGCCGCCGGccgcgcgUG-CGAa -3'
miRNA:   3'- cCGGUGGgGGUCGGCGGCCa------ACuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.