miRNA display CGI


Results 1 - 20 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 128 0.66 0.632057
Target:  5'- cGCCGCCCCUGGUgcuCGCgGGgcUGGCa- -3'
miRNA:   3'- cCGGUGGGGGUCG---GCGgCCa-ACUGcu -5'
23777 5' -62.2 NC_005261.1 + 342 0.66 0.612425
Target:  5'- cGGCgGCCCgCAGCCcgGCgCGGcccGGCGGc -3'
miRNA:   3'- -CCGgUGGGgGUCGG--CG-GCCaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 1290 0.67 0.563695
Target:  5'- aGGCCggcgggGCUCCC-GUCGCCGGc-GGCGGc -3'
miRNA:   3'- -CCGG------UGGGGGuCGGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 1389 0.66 0.641876
Target:  5'- aGGCCACgCCgggcgccgCGGCCGCgGcGgcGGCGGg -3'
miRNA:   3'- -CCGGUGgGG--------GUCGGCGgC-CaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 1494 0.66 0.612425
Target:  5'- aGGCCACCgCC-GCgGCCGGcagcucgucgGGCGc -3'
miRNA:   3'- -CCGGUGGgGGuCGgCGGCCaa--------CUGCu -5'
23777 5' -62.2 NC_005261.1 + 1578 0.68 0.50671
Target:  5'- cGCCgaGCCCCCAGCgGuuGGcgGcGCGGu -3'
miRNA:   3'- cCGG--UGGGGGUCGgCggCCaaC-UGCU- -5'
23777 5' -62.2 NC_005261.1 + 2250 0.7 0.382711
Target:  5'- cGGCCACUCa-GGCCGCCGGcgcucguccucgccgGGCGGc -3'
miRNA:   3'- -CCGGUGGGggUCGGCGGCCaa-------------CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 2603 0.69 0.461174
Target:  5'- aGCCGCCgUCggcggcggGGCCGCCGGgcGGCa- -3'
miRNA:   3'- cCGGUGGgGG--------UCGGCGGCCaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 2705 0.67 0.563695
Target:  5'- uGGCCggcgccggGCCCCUGGCC-CCGGccGACu- -3'
miRNA:   3'- -CCGG--------UGGGGGUCGGcGGCCaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 2776 0.74 0.215162
Target:  5'- aGGcCCGCCCCCGaggggcuGCCGCCGGcgGcCGGg -3'
miRNA:   3'- -CC-GGUGGGGGU-------CGGCGGCCaaCuGCU- -5'
23777 5' -62.2 NC_005261.1 + 3385 0.66 0.622238
Target:  5'- cGGCCGCCagccgcgCCGGCacuucCGCCGGcgGGCuGAa -3'
miRNA:   3'- -CCGGUGGg------GGUCG-----GCGGCCaaCUG-CU- -5'
23777 5' -62.2 NC_005261.1 + 3517 0.71 0.361651
Target:  5'- cGGCCGCCUCCAGCgCGgCGGccgccucGGCGc -3'
miRNA:   3'- -CCGGUGGGGGUCG-GCgGCCaa-----CUGCu -5'
23777 5' -62.2 NC_005261.1 + 4293 0.71 0.339214
Target:  5'- cGGCCgcggGCCCCgCGGCCGCCGcGUaGcgcGCGGc -3'
miRNA:   3'- -CCGG----UGGGG-GUCGGCGGC-CAaC---UGCU- -5'
23777 5' -62.2 NC_005261.1 + 4881 0.68 0.47914
Target:  5'- cGGCCGCCUCagccgCGGCCGCCucGGcUUcGGCGGc -3'
miRNA:   3'- -CCGGUGGGG-----GUCGGCGG--CC-AA-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 4953 0.68 0.47914
Target:  5'- cGGCCcaggcGCCCCCGGCCGCgGcGUccucUGGgGc -3'
miRNA:   3'- -CCGG-----UGGGGGUCGGCGgC-CA----ACUgCu -5'
23777 5' -62.2 NC_005261.1 + 5252 0.7 0.377173
Target:  5'- uGGCCGgCUCguGcCCGCCGGgaGACGc -3'
miRNA:   3'- -CCGGUgGGGguC-GGCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 6332 0.68 0.497442
Target:  5'- uGGCCgcguACCCCCuGCCcaccggccucgcGCCGGUccGGCGc -3'
miRNA:   3'- -CCGG----UGGGGGuCGG------------CGGCCAa-CUGCu -5'
23777 5' -62.2 NC_005261.1 + 8384 0.67 0.573376
Target:  5'- gGGCC-CCCCCaAGCCgggGCUGGgauuCGAa -3'
miRNA:   3'- -CCGGuGGGGG-UCGG---CGGCCaacuGCU- -5'
23777 5' -62.2 NC_005261.1 + 9870 0.66 0.620274
Target:  5'- cGGCCugCCCCGGCgagcccacccuaGCCGGcccgcccggGGCa- -3'
miRNA:   3'- -CCGGugGGGGUCGg-----------CGGCCaa-------CUGcu -5'
23777 5' -62.2 NC_005261.1 + 9927 0.66 0.620274
Target:  5'- cGGCCugCCCCGGCgagcccacccuaGCCGGcccgcccggGGCa- -3'
miRNA:   3'- -CCGGugGGGGUCGg-----------CGGCCaa-------CUGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.