Results 41 - 60 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23777 | 5' | -62.2 | NC_005261.1 | + | 28599 | 0.66 | 0.612425 |
Target: 5'- gGGCCGCCCgcgCCgAGCUGgCGGagcugUGGCGc -3' miRNA: 3'- -CCGGUGGG---GG-UCGGCgGCCa----ACUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 10544 | 0.66 | 0.612425 |
Target: 5'- uGUCGCCCCCGGCgCGCCuGccgGGCc- -3' miRNA: 3'- cCGGUGGGGGUCG-GCGGcCaa-CUGcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 68318 | 0.66 | 0.612425 |
Target: 5'- cGGCCGCUUCgAcgUGCCGGUcGGCGAc -3' miRNA: 3'- -CCGGUGGGGgUcgGCGGCCAaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 1494 | 0.66 | 0.612425 |
Target: 5'- aGGCCACCgCC-GCgGCCGGcagcucgucgGGCGc -3' miRNA: 3'- -CCGGUGGgGGuCGgCGGCCaa--------CUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 342 | 0.66 | 0.612425 |
Target: 5'- cGGCgGCCCgCAGCCcgGCgCGGcccGGCGGc -3' miRNA: 3'- -CCGgUGGGgGUCGG--CG-GCCaa-CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 62670 | 0.66 | 0.612425 |
Target: 5'- aGGCCAgcgccacguCCgCCAGCugcacgCGCCGGcgcagcgUGGCGAg -3' miRNA: 3'- -CCGGU---------GGgGGUCG------GCGGCCa------ACUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 91134 | 0.66 | 0.612425 |
Target: 5'- cGGCCGaggCCUCAGCCguGCCGcccGGCGAg -3' miRNA: 3'- -CCGGUg--GGGGUCGG--CGGCcaaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 72224 | 0.66 | 0.612425 |
Target: 5'- uGGUguCCCgCCGGCCGgCGGUgcGCGc -3' miRNA: 3'- -CCGguGGG-GGUCGGCgGCCAacUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 107400 | 0.66 | 0.612425 |
Target: 5'- cGGCCAgagCCCGGCCGCCaGGgc--CGAg -3' miRNA: 3'- -CCGGUgg-GGGUCGGCGG-CCaacuGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 138013 | 0.66 | 0.612425 |
Target: 5'- cGGCgGCCCgCAGCCcgGCgCGGcccGGCGGc -3' miRNA: 3'- -CCGgUGGGgGUCGG--CG-GCCaa-CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 82996 | 0.66 | 0.611445 |
Target: 5'- cGGCCGCCucgcgcaCCgAGCCGCCGucgccGGCGc -3' miRNA: 3'- -CCGGUGG-------GGgUCGGCGGCcaa--CUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 103575 | 0.66 | 0.602626 |
Target: 5'- cGCCGCCgCCCGcgccgucgcucGCCGCCGuGgccgcGGCGGc -3' miRNA: 3'- cCGGUGG-GGGU-----------CGGCGGC-Caa---CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 12184 | 0.66 | 0.602626 |
Target: 5'- cGCCGCCgCCAccaugcagcgccGCCGCCGG-UGcCGc -3' miRNA: 3'- cCGGUGGgGGU------------CGGCGGCCaACuGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 72881 | 0.66 | 0.602626 |
Target: 5'- aGGuCCGCCCC--GCCGCCGGggua-GAg -3' miRNA: 3'- -CC-GGUGGGGguCGGCGGCCaacugCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 116054 | 0.66 | 0.602626 |
Target: 5'- uGGCCuugGCgCCCCgcguGGCgCGCCGGUccccGugGAu -3' miRNA: 3'- -CCGG---UG-GGGG----UCG-GCGGCCAa---CugCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 34270 | 0.66 | 0.602626 |
Target: 5'- gGGCCcguagACCUCaCGGCgGCCGGcgggGACGc -3' miRNA: 3'- -CCGG-----UGGGG-GUCGgCGGCCaa--CUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 15934 | 0.66 | 0.602626 |
Target: 5'- gGGCCGgggCCCgGGCaggaGCCGGgggcgagUGGCGGg -3' miRNA: 3'- -CCGGUg--GGGgUCGg---CGGCCa------ACUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 17054 | 0.67 | 0.592848 |
Target: 5'- gGGCUGCUCgCGGCCGuCCuGGaagGGCGAc -3' miRNA: 3'- -CCGGUGGGgGUCGGC-GG-CCaa-CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 60286 | 0.67 | 0.592848 |
Target: 5'- gGGuCCGCCCCCgcGGCCcgcaggcaGUCGGcugaGACGAu -3' miRNA: 3'- -CC-GGUGGGGG--UCGG--------CGGCCaa--CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 83847 | 0.67 | 0.592848 |
Target: 5'- gGGCCGCggCCCCgcugGGCUggGCCGGgccgGACGc -3' miRNA: 3'- -CCGGUG--GGGG----UCGG--CGGCCaa--CUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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