miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 10544 0.66 0.612425
Target:  5'- uGUCGCCCCCGGCgCGCCuGccgGGCc- -3'
miRNA:   3'- cCGGUGGGGGUCG-GCGGcCaa-CUGcu -5'
23777 5' -62.2 NC_005261.1 + 12184 0.66 0.602626
Target:  5'- cGCCGCCgCCAccaugcagcgccGCCGCCGG-UGcCGc -3'
miRNA:   3'- cCGGUGGgGGU------------CGGCGGCCaACuGCu -5'
23777 5' -62.2 NC_005261.1 + 13072 0.66 0.632057
Target:  5'- gGGCgCGuCCgCCGGcCCGUCGGcgGGCGGc -3'
miRNA:   3'- -CCG-GU-GGgGGUC-GGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 13938 0.66 0.641876
Target:  5'- cGGUCGCguugcggCCCAGCCGCgcggaaacgcgCGGUcaggGACGAc -3'
miRNA:   3'- -CCGGUGg------GGGUCGGCG-----------GCCAa---CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 14995 0.67 0.544469
Target:  5'- cGGCCGCgCCCGGagCGCgGGagGAgGAg -3'
miRNA:   3'- -CCGGUGgGGGUCg-GCGgCCaaCUgCU- -5'
23777 5' -62.2 NC_005261.1 + 15259 0.69 0.452325
Target:  5'- gGGCCGCgaucgCCCCGgcggcGCCGCCGGggcgcGCGGu -3'
miRNA:   3'- -CCGGUG-----GGGGU-----CGGCGGCCaac--UGCU- -5'
23777 5' -62.2 NC_005261.1 + 15753 0.67 0.567562
Target:  5'- aGGCCgACCgCCUcgccgcgauacacaaGGCCGCUGGcgGGCGc -3'
miRNA:   3'- -CCGG-UGG-GGG---------------UCGGCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 15934 0.66 0.602626
Target:  5'- gGGCCGgggCCCgGGCaggaGCCGGgggcgagUGGCGGg -3'
miRNA:   3'- -CCGGUg--GGGgUCGg---CGGCCa------ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 16060 0.66 0.651688
Target:  5'- gGGcCCGCgCCgAGCCGgCGcGUguaGACGAa -3'
miRNA:   3'- -CC-GGUGgGGgUCGGCgGC-CAa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 16321 0.7 0.377173
Target:  5'- gGGCCcuCCCCCucGCCGCCGGUc----- -3'
miRNA:   3'- -CCGGu-GGGGGu-CGGCGGCCAacugcu -5'
23777 5' -62.2 NC_005261.1 + 17054 0.67 0.592848
Target:  5'- gGGCUGCUCgCGGCCGuCCuGGaagGGCGAc -3'
miRNA:   3'- -CCGGUGGGgGUCGGC-GG-CCaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 18137 0.69 0.470113
Target:  5'- aGCCGCaggCCCAGUCGCCGa-UGGCGu -3'
miRNA:   3'- cCGGUGg--GGGUCGGCGGCcaACUGCu -5'
23777 5' -62.2 NC_005261.1 + 19793 0.71 0.369357
Target:  5'- cGGCC-CUCCgagccggggguCAGCCGCCGGUcGAUGc -3'
miRNA:   3'- -CCGGuGGGG-----------GUCGGCGGCCAaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 20649 0.75 0.186957
Target:  5'- cGCCGCCCgCA-CCGCCGGU-GGCGGc -3'
miRNA:   3'- cCGGUGGGgGUcGGCGGCCAaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 21200 0.72 0.302088
Target:  5'- cGGCCGCggacgcuggCCCCGGCCGCgacggcgggcccguCGGcUGGCGGc -3'
miRNA:   3'- -CCGGUG---------GGGGUCGGCG--------------GCCaACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 21793 0.72 0.324826
Target:  5'- gGGCCGCCg-CAGCCGCCGGccgGGCc- -3'
miRNA:   3'- -CCGGUGGggGUCGGCGGCCaa-CUGcu -5'
23777 5' -62.2 NC_005261.1 + 22670 0.78 0.11718
Target:  5'- gGGCgGCgCCCGaguGCCGCCGGggGACGGg -3'
miRNA:   3'- -CCGgUGgGGGU---CGGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 22816 0.67 0.573376
Target:  5'- cGGCgCugCCgCC-GCCGCC-GUUGGCGc -3'
miRNA:   3'- -CCG-GugGG-GGuCGGCGGcCAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 23611 0.66 0.632057
Target:  5'- uGUCGCCgCC-GCUGCCGGggcgcGGCGGg -3'
miRNA:   3'- cCGGUGGgGGuCGGCGGCCaa---CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 23762 0.67 0.573376
Target:  5'- gGGCUugCCCCGGgCggGCCGGcuaggGugGGc -3'
miRNA:   3'- -CCGGugGGGGUCgG--CGGCCaa---CugCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.