Results 21 - 40 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23780 | 3' | -69.5 | NC_005261.1 | + | 90041 | 0.66 | 0.304558 |
Target: 5'- -gGGCUUCCugcugccggacagCCagcgGCgCCCCGCGGGCGcCg -3' miRNA: 3'- ugCCGGAGG-------------GG----CG-GGGGCGCCCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 35495 | 0.66 | 0.298776 |
Target: 5'- cGCGGCa--CCCGCccuugCCCCGCuGGcaGCGGCa -3' miRNA: 3'- -UGCCGgagGGGCG-----GGGGCG-CC--CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 1666 | 0.66 | 0.305206 |
Target: 5'- cGCGGCCaugUCCuuGCgCCCGuCGagccGCGGCa -3' miRNA: 3'- -UGCCGG---AGGggCGgGGGC-GCc---CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 22627 | 0.66 | 0.338938 |
Target: 5'- cGCGuCCcgCCCCGUCCCgucccuagacgCGCuGGCGGCg -3' miRNA: 3'- -UGCcGGa-GGGGCGGGG-----------GCGcCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 71983 | 0.66 | 0.303266 |
Target: 5'- cGCGGCaggugcgcagcgucgCCCCugGCCUuaacgCCGgGGGCGACg -3' miRNA: 3'- -UGCCGga-------------GGGG--CGGG-----GGCgCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 86913 | 0.66 | 0.311741 |
Target: 5'- cGCGGaCCcgcgUCCaccgCCGCCgCCGCGcGCGGCg -3' miRNA: 3'- -UGCC-GG----AGG----GGCGGgGGCGCcCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 105464 | 0.66 | 0.305206 |
Target: 5'- cACGGCCgCCCUcaGCuCCUCG-GGGCGcGCg -3' miRNA: 3'- -UGCCGGaGGGG--CG-GGGGCgCCCGC-UG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 88119 | 0.66 | 0.311741 |
Target: 5'- cCGGCUucuucaacccauUCCUCGCgCCgCGCGGG-GGCg -3' miRNA: 3'- uGCCGG------------AGGGGCGgGG-GCGCCCgCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 94399 | 0.66 | 0.311082 |
Target: 5'- gGCGGCCUCCUCGacgaagggcgcgaCgUCCGCGGcGCcGCc -3' miRNA: 3'- -UGCCGGAGGGGC-------------GgGGGCGCC-CGcUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 52526 | 0.66 | 0.298776 |
Target: 5'- gACGGCCgCCCgaaaCGCUUCC-CGGGcCGGCu -3' miRNA: 3'- -UGCCGGaGGG----GCGGGGGcGCCC-GCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 30877 | 0.66 | 0.305206 |
Target: 5'- -gGGCCgccggCCCUGCCgCCCGagcuCGGGCuggGGCc -3' miRNA: 3'- ugCCGGa----GGGGCGG-GGGC----GCCCG---CUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 16424 | 0.66 | 0.311741 |
Target: 5'- -aGGCCcCCUCGa--CgGCGGGCGGCg -3' miRNA: 3'- ugCCGGaGGGGCgggGgCGCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 120606 | 0.66 | 0.311741 |
Target: 5'- uGCGGCCUCggcgCCgugggGCUCCUGCuGGUGGCg -3' miRNA: 3'- -UGCCGGAGg---GG-----CGGGGGCGcCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 127682 | 0.66 | 0.305206 |
Target: 5'- gGCGGCggCCgCUGCCCCgGCGGcGcCGGa -3' miRNA: 3'- -UGCCGgaGG-GGCGGGGgCGCC-C-GCUg -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 118701 | 0.66 | 0.305206 |
Target: 5'- cGCGGCgUggUCCUGCUCagcguCGCGGGCGGg -3' miRNA: 3'- -UGCCGgA--GGGGCGGGg----GCGCCCGCUg -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 16354 | 0.66 | 0.298776 |
Target: 5'- cCGGCUccguccucuUCCCCGCCgccuucUCCGUGGGCc-- -3' miRNA: 3'- uGCCGG---------AGGGGCGG------GGGCGCCCGcug -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 14296 | 0.66 | 0.318381 |
Target: 5'- -aGGCCggCCCCGaCCgguagCCCGaGGaGCGACg -3' miRNA: 3'- ugCCGGa-GGGGC-GG-----GGGCgCC-CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 75560 | 0.66 | 0.311741 |
Target: 5'- cCGGCCaUCCCCGggg-CGCuGGGCGGCg -3' miRNA: 3'- uGCCGG-AGGGGCggggGCG-CCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 108594 | 0.66 | 0.311741 |
Target: 5'- uUGGCCUCgCCCacgggcaccaGCgCCU-CGGGCGGCa -3' miRNA: 3'- uGCCGGAG-GGG----------CGgGGGcGCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 96224 | 0.66 | 0.298776 |
Target: 5'- uCGGCCUgaagcgaaCCUUcCUCCCGCGGGUGGu -3' miRNA: 3'- uGCCGGA--------GGGGcGGGGGCGCCCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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