miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 105464 0.66 0.305206
Target:  5'- cACGGCCgCCCUcaGCuCCUCG-GGGCGcGCg -3'
miRNA:   3'- -UGCCGGaGGGG--CG-GGGGCgCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 30877 0.66 0.305206
Target:  5'- -gGGCCgccggCCCUGCCgCCCGagcuCGGGCuggGGCc -3'
miRNA:   3'- ugCCGGa----GGGGCGG-GGGC----GCCCG---CUG- -5'
23780 3' -69.5 NC_005261.1 + 1666 0.66 0.305206
Target:  5'- cGCGGCCaugUCCuuGCgCCCGuCGagccGCGGCa -3'
miRNA:   3'- -UGCCGG---AGGggCGgGGGC-GCc---CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 55003 0.66 0.303911
Target:  5'- gGCGGCCUCgugcacaacgacgcuCCCGUagccgccggCCCCGCGcagcugcgcggggccGGCGAg -3'
miRNA:   3'- -UGCCGGAG---------------GGGCG---------GGGGCGC---------------CCGCUg -5'
23780 3' -69.5 NC_005261.1 + 137681 0.66 0.298776
Target:  5'- -gGGCCccCCaCCGCCCCUcgugcaGCGGGCcccGCg -3'
miRNA:   3'- ugCCGGa-GG-GGCGGGGG------CGCCCGc--UG- -5'
23780 3' -69.5 NC_005261.1 + 22627 0.66 0.338938
Target:  5'- cGCGuCCcgCCCCGUCCCgucccuagacgCGCuGGCGGCg -3'
miRNA:   3'- -UGCcGGa-GGGGCGGGG-----------GCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 90041 0.66 0.304558
Target:  5'- -gGGCUUCCugcugccggacagCCagcgGCgCCCCGCGGGCGcCg -3'
miRNA:   3'- ugCCGGAGG-------------GG----CG-GGGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 109754 0.66 0.298776
Target:  5'- uGCGG-CUCCCgGCCgCCGCgucgccgucucGGGCGuCc -3'
miRNA:   3'- -UGCCgGAGGGgCGGgGGCG-----------CCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 16354 0.66 0.298776
Target:  5'- cCGGCUccguccucuUCCCCGCCgccuucUCCGUGGGCc-- -3'
miRNA:   3'- uGCCGG---------AGGGGCGG------GGGCGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 122373 0.66 0.298776
Target:  5'- cGCGGCC-CCaCCGCggCCUGgGGGCG-Cu -3'
miRNA:   3'- -UGCCGGaGG-GGCGg-GGGCgCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 96224 0.66 0.298776
Target:  5'- uCGGCCUgaagcgaaCCUUcCUCCCGCGGGUGGu -3'
miRNA:   3'- uGCCGGA--------GGGGcGGGGGCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 107846 0.66 0.305206
Target:  5'- cCGGUCgccgCCgCCGCCCUCGCcGGCcGCc -3'
miRNA:   3'- uGCCGGa---GG-GGCGGGGGCGcCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 35495 0.66 0.298776
Target:  5'- cGCGGCa--CCCGCccuugCCCCGCuGGcaGCGGCa -3'
miRNA:   3'- -UGCCGgagGGGCG-----GGGGCG-CC--CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 71983 0.66 0.303266
Target:  5'- cGCGGCaggugcgcagcgucgCCCCugGCCUuaacgCCGgGGGCGACg -3'
miRNA:   3'- -UGCCGga-------------GGGG--CGGG-----GGCgCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 52526 0.66 0.298776
Target:  5'- gACGGCCgCCCgaaaCGCUUCC-CGGGcCGGCu -3'
miRNA:   3'- -UGCCGGaGGG----GCGGGGGcGCCC-GCUG- -5'
23780 3' -69.5 NC_005261.1 + 5606 0.66 0.305206
Target:  5'- -aGGCCcCCCCcucuaaCCCCUuugcuGCGGcGCGACg -3'
miRNA:   3'- ugCCGGaGGGGc-----GGGGG-----CGCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 1610 0.66 0.298776
Target:  5'- cUGGCCgCCUCGCCCuCCGCGaagucCGGCu -3'
miRNA:   3'- uGCCGGaGGGGCGGG-GGCGCcc---GCUG- -5'
23780 3' -69.5 NC_005261.1 + 59640 0.66 0.298776
Target:  5'- cGCGGUCg--CUGUCCUCgagGCGGGCGACu -3'
miRNA:   3'- -UGCCGGaggGGCGGGGG---CGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 9430 0.66 0.305206
Target:  5'- cUGGCC-CCCCaCCCCCaccCGGGCa-- -3'
miRNA:   3'- uGCCGGaGGGGcGGGGGc--GCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 48745 0.66 0.298776
Target:  5'- -aGGCaCUgcgcguagUCgCGCCCCC-CGGGCGGCc -3'
miRNA:   3'- ugCCG-GA--------GGgGCGGGGGcGCCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.