miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 22627 0.66 0.338938
Target:  5'- cGCGuCCcgCCCCGUCCCgucccuagacgCGCuGGCGGCg -3'
miRNA:   3'- -UGCcGGa-GGGGCGGGG-----------GCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 118870 0.75 0.069923
Target:  5'- cGCGGCCcuggCCUCGgCCaCCGCGGGCGcGCu -3'
miRNA:   3'- -UGCCGGa---GGGGCgGG-GGCGCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 33633 0.75 0.073461
Target:  5'- gGCGcGCCccgcaCCCCGCCCCCGCGcGCGcCg -3'
miRNA:   3'- -UGC-CGGa----GGGGCGGGGGCGCcCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 31297 0.75 0.075294
Target:  5'- cGCGGCC-CgCCGCCgcgcggggCCCGCGGGCGcGCu -3'
miRNA:   3'- -UGCCGGaGgGGCGG--------GGGCGCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 110872 0.75 0.077171
Target:  5'- cGCGGCCUaCCgCUGCCCCgucuCGCggcuGGGCGACu -3'
miRNA:   3'- -UGCCGGA-GG-GGCGGGG----GCG----CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 134865 0.75 0.079092
Target:  5'- -aGGCg-CCCgCGCCCCCGCGGGCc-- -3'
miRNA:   3'- ugCCGgaGGG-GCGGGGGCGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 81402 0.75 0.079092
Target:  5'- cCGGCCUCCCCaGCUCCCccagGCacaGGCGGCg -3'
miRNA:   3'- uGCCGGAGGGG-CGGGGG----CGc--CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 102958 0.75 0.079873
Target:  5'- gGCGGCCgcgggcgccgcgggCUCCGCCgCCGCGcGCGACa -3'
miRNA:   3'- -UGCCGGa-------------GGGGCGGgGGCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 97390 0.74 0.081059
Target:  5'- cGCGGCUUUCgCGCCUgCCGCGGGCuuGGCg -3'
miRNA:   3'- -UGCCGGAGGgGCGGG-GGCGCCCG--CUG- -5'
23780 3' -69.5 NC_005261.1 + 31189 0.75 0.068216
Target:  5'- gGCGGCCUaCUgCCGCCCCgagguCGCGGcGCGGCu -3'
miRNA:   3'- -UGCCGGA-GG-GGCGGGG-----GCGCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 68192 0.75 0.068216
Target:  5'- -gGGCCcCCUCGCCCCCGCcgccGGcGCGGCc -3'
miRNA:   3'- ugCCGGaGGGGCGGGGGCG----CC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 35069 0.76 0.066057
Target:  5'- gGCGGUCUCCgCGCCCCCucgcccucggagccGCGGugaGCGGCg -3'
miRNA:   3'- -UGCCGGAGGgGCGGGGG--------------CGCC---CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 104975 0.8 0.032228
Target:  5'- aGCGuCCUcCCCCGCCCCggcgcccagCGCGGGCGGCg -3'
miRNA:   3'- -UGCcGGA-GGGGCGGGG---------GCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 6250 0.8 0.033051
Target:  5'- -gGGCCUgCCCGCCCCgCG-GGGCGGCc -3'
miRNA:   3'- ugCCGGAgGGGCGGGG-GCgCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 127269 0.8 0.033894
Target:  5'- uACGGCCgggCCCGCCCgCCGCGGG-GGCa -3'
miRNA:   3'- -UGCCGGag-GGGCGGG-GGCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 35129 0.78 0.042495
Target:  5'- gGCGGCgUcgcaCCCCGCCCCCGCGGcGCa-- -3'
miRNA:   3'- -UGCCGgA----GGGGCGGGGGCGCC-CGcug -5'
23780 3' -69.5 NC_005261.1 + 72719 0.78 0.042495
Target:  5'- cGCGcccGCCgCCCCGUCCgCGCGGGCGGCc -3'
miRNA:   3'- -UGC---CGGaGGGGCGGGgGCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 68837 0.78 0.043573
Target:  5'- gGCGGCCcCCCCG-UCCCGCGGG-GACg -3'
miRNA:   3'- -UGCCGGaGGGGCgGGGGCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 110159 0.77 0.050627
Target:  5'- cAUGGCCgccgCCaCCGCgCCCCcCGGGCGGCa -3'
miRNA:   3'- -UGCCGGa---GG-GGCG-GGGGcGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 105618 0.76 0.064922
Target:  5'- uGCGGCacgUCCCCGCUCCCguGCGGGUcaaaGACg -3'
miRNA:   3'- -UGCCGg--AGGGGCGGGGG--CGCCCG----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.