miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 135115 0.66 0.318381
Target:  5'- gGCGGaCC-CCgCGUCUCCGCaGcGCGGCg -3'
miRNA:   3'- -UGCC-GGaGGgGCGGGGGCGcC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 74902 0.66 0.311741
Target:  5'- gGCGGCCcgCgCUGgCCgCGCGGGgGAg -3'
miRNA:   3'- -UGCCGGa-GgGGCgGGgGCGCCCgCUg -5'
23780 3' -69.5 NC_005261.1 + 11519 0.66 0.311741
Target:  5'- uCGGCCcgaaaaaaUCUCUGaCCCCGCguuGGGCGAa -3'
miRNA:   3'- uGCCGG--------AGGGGCgGGGGCG---CCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 108594 0.66 0.311741
Target:  5'- uUGGCCUCgCCCacgggcaccaGCgCCU-CGGGCGGCa -3'
miRNA:   3'- uGCCGGAG-GGG----------CGgGGGcGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 95380 0.66 0.311741
Target:  5'- cGCGGCC-CCCCggcgcGCCgCUCGCGGccaucaCGGCg -3'
miRNA:   3'- -UGCCGGaGGGG-----CGG-GGGCGCCc-----GCUG- -5'
23780 3' -69.5 NC_005261.1 + 120606 0.66 0.311741
Target:  5'- uGCGGCCUCggcgCCgugggGCUCCUGCuGGUGGCg -3'
miRNA:   3'- -UGCCGGAGg---GG-----CGGGGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 53113 0.66 0.311741
Target:  5'- cGCGGCgCUgCgCGCCgCCaacaGGGCGGCg -3'
miRNA:   3'- -UGCCG-GAgGgGCGGgGGcg--CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 76341 0.66 0.311741
Target:  5'- gGCGGCagcgccccCUCCCC-UCCCCGCGcGcGCGuGCa -3'
miRNA:   3'- -UGCCG--------GAGGGGcGGGGGCGC-C-CGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 75560 0.66 0.311741
Target:  5'- cCGGCCaUCCCCGggg-CGCuGGGCGGCg -3'
miRNA:   3'- uGCCGG-AGGGGCggggGCG-CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 88119 0.66 0.311741
Target:  5'- cCGGCUucuucaacccauUCCUCGCgCCgCGCGGG-GGCg -3'
miRNA:   3'- uGCCGG------------AGGGGCGgGG-GCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 16424 0.66 0.311741
Target:  5'- -aGGCCcCCUCGa--CgGCGGGCGGCg -3'
miRNA:   3'- ugCCGGaGGGGCgggGgCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 12130 0.66 0.311741
Target:  5'- gAUGGCg--CCCGCCgCCGCGG-CGGCc -3'
miRNA:   3'- -UGCCGgagGGGCGGgGGCGCCcGCUG- -5'
23780 3' -69.5 NC_005261.1 + 86913 0.66 0.311741
Target:  5'- cGCGGaCCcgcgUCCaccgCCGCCgCCGCGcGCGGCg -3'
miRNA:   3'- -UGCC-GG----AGG----GGCGGgGGCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 94399 0.66 0.311082
Target:  5'- gGCGGCCUCCUCGacgaagggcgcgaCgUCCGCGGcGCcGCc -3'
miRNA:   3'- -UGCCGGAGGGGC-------------GgGGGCGCC-CGcUG- -5'
23780 3' -69.5 NC_005261.1 + 47397 0.66 0.309769
Target:  5'- gGCGGCgCcgccCCCCGUgcacacgcgguacuCCCgGUGGGCGAa -3'
miRNA:   3'- -UGCCG-Ga---GGGGCG--------------GGGgCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 105464 0.66 0.305206
Target:  5'- cACGGCCgCCCUcaGCuCCUCG-GGGCGcGCg -3'
miRNA:   3'- -UGCCGGaGGGG--CG-GGGGCgCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 107846 0.66 0.305206
Target:  5'- cCGGUCgccgCCgCCGCCCUCGCcGGCcGCc -3'
miRNA:   3'- uGCCGGa---GG-GGCGGGGGCGcCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 9430 0.66 0.305206
Target:  5'- cUGGCC-CCCCaCCCCCaccCGGGCa-- -3'
miRNA:   3'- uGCCGGaGGGGcGGGGGc--GCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 103452 0.66 0.305206
Target:  5'- cGCGGUCggCCgCCGCgCCCGUcgccaGGGCGuCc -3'
miRNA:   3'- -UGCCGGa-GG-GGCGgGGGCG-----CCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 1666 0.66 0.305206
Target:  5'- cGCGGCCaugUCCuuGCgCCCGuCGagccGCGGCa -3'
miRNA:   3'- -UGCCGG---AGGggCGgGGGC-GCc---CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.