Results 1 - 20 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23780 | 3' | -69.5 | NC_005261.1 | + | 22627 | 0.66 | 0.338938 |
Target: 5'- cGCGuCCcgCCCCGUCCCgucccuagacgCGCuGGCGGCg -3' miRNA: 3'- -UGCcGGa-GGGGCGGGG-----------GCGcCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 118870 | 0.75 | 0.069923 |
Target: 5'- cGCGGCCcuggCCUCGgCCaCCGCGGGCGcGCu -3' miRNA: 3'- -UGCCGGa---GGGGCgGG-GGCGCCCGC-UG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 33633 | 0.75 | 0.073461 |
Target: 5'- gGCGcGCCccgcaCCCCGCCCCCGCGcGCGcCg -3' miRNA: 3'- -UGC-CGGa----GGGGCGGGGGCGCcCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 31297 | 0.75 | 0.075294 |
Target: 5'- cGCGGCC-CgCCGCCgcgcggggCCCGCGGGCGcGCu -3' miRNA: 3'- -UGCCGGaGgGGCGG--------GGGCGCCCGC-UG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 110872 | 0.75 | 0.077171 |
Target: 5'- cGCGGCCUaCCgCUGCCCCgucuCGCggcuGGGCGACu -3' miRNA: 3'- -UGCCGGA-GG-GGCGGGG----GCG----CCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 134865 | 0.75 | 0.079092 |
Target: 5'- -aGGCg-CCCgCGCCCCCGCGGGCc-- -3' miRNA: 3'- ugCCGgaGGG-GCGGGGGCGCCCGcug -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 81402 | 0.75 | 0.079092 |
Target: 5'- cCGGCCUCCCCaGCUCCCccagGCacaGGCGGCg -3' miRNA: 3'- uGCCGGAGGGG-CGGGGG----CGc--CCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 102958 | 0.75 | 0.079873 |
Target: 5'- gGCGGCCgcgggcgccgcgggCUCCGCCgCCGCGcGCGACa -3' miRNA: 3'- -UGCCGGa-------------GGGGCGGgGGCGCcCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 97390 | 0.74 | 0.081059 |
Target: 5'- cGCGGCUUUCgCGCCUgCCGCGGGCuuGGCg -3' miRNA: 3'- -UGCCGGAGGgGCGGG-GGCGCCCG--CUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 31189 | 0.75 | 0.068216 |
Target: 5'- gGCGGCCUaCUgCCGCCCCgagguCGCGGcGCGGCu -3' miRNA: 3'- -UGCCGGA-GG-GGCGGGG-----GCGCC-CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 68192 | 0.75 | 0.068216 |
Target: 5'- -gGGCCcCCUCGCCCCCGCcgccGGcGCGGCc -3' miRNA: 3'- ugCCGGaGGGGCGGGGGCG----CC-CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 35069 | 0.76 | 0.066057 |
Target: 5'- gGCGGUCUCCgCGCCCCCucgcccucggagccGCGGugaGCGGCg -3' miRNA: 3'- -UGCCGGAGGgGCGGGGG--------------CGCC---CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 104975 | 0.8 | 0.032228 |
Target: 5'- aGCGuCCUcCCCCGCCCCggcgcccagCGCGGGCGGCg -3' miRNA: 3'- -UGCcGGA-GGGGCGGGG---------GCGCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 6250 | 0.8 | 0.033051 |
Target: 5'- -gGGCCUgCCCGCCCCgCG-GGGCGGCc -3' miRNA: 3'- ugCCGGAgGGGCGGGG-GCgCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 127269 | 0.8 | 0.033894 |
Target: 5'- uACGGCCgggCCCGCCCgCCGCGGG-GGCa -3' miRNA: 3'- -UGCCGGag-GGGCGGG-GGCGCCCgCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 35129 | 0.78 | 0.042495 |
Target: 5'- gGCGGCgUcgcaCCCCGCCCCCGCGGcGCa-- -3' miRNA: 3'- -UGCCGgA----GGGGCGGGGGCGCC-CGcug -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 72719 | 0.78 | 0.042495 |
Target: 5'- cGCGcccGCCgCCCCGUCCgCGCGGGCGGCc -3' miRNA: 3'- -UGC---CGGaGGGGCGGGgGCGCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 68837 | 0.78 | 0.043573 |
Target: 5'- gGCGGCCcCCCCG-UCCCGCGGG-GACg -3' miRNA: 3'- -UGCCGGaGGGGCgGGGGCGCCCgCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 110159 | 0.77 | 0.050627 |
Target: 5'- cAUGGCCgccgCCaCCGCgCCCCcCGGGCGGCa -3' miRNA: 3'- -UGCCGGa---GG-GGCG-GGGGcGCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 105618 | 0.76 | 0.064922 |
Target: 5'- uGCGGCacgUCCCCGCUCCCguGCGGGUcaaaGACg -3' miRNA: 3'- -UGCCGg--AGGGGCGGGGG--CGCCCG----CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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