miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23781 5' -58.8 NC_005261.1 + 68373 0.66 0.759013
Target:  5'- cUCGGCGUcgCCUCg-GGGCuCGUGCUc -3'
miRNA:   3'- aAGCUGCG--GGAGgaCCCGuGCAUGAc -5'
23781 5' -58.8 NC_005261.1 + 127891 0.66 0.75711
Target:  5'- -cCGGCGCCCgucgggcccgggCCUGGGCuuGgGCUc -3'
miRNA:   3'- aaGCUGCGGGa-----------GGACCCGugCaUGAc -5'
23781 5' -58.8 NC_005261.1 + 29566 0.66 0.739786
Target:  5'- -cUGGCGCgCCUgCUGcagcGGCGCGUGCa- -3'
miRNA:   3'- aaGCUGCG-GGAgGAC----CCGUGCAUGac -5'
23781 5' -58.8 NC_005261.1 + 94397 0.67 0.719198
Target:  5'- -gCGGCGgCCUCCUcgacgaaGGGCGCG-ACg- -3'
miRNA:   3'- aaGCUGCgGGAGGA-------CCCGUGCaUGac -5'
23781 5' -58.8 NC_005261.1 + 44072 0.67 0.71027
Target:  5'- --gGACGCCUUCC-GGGCGucCGUGgUGc -3'
miRNA:   3'- aagCUGCGGGAGGaCCCGU--GCAUgAC- -5'
23781 5' -58.8 NC_005261.1 + 102485 0.67 0.707281
Target:  5'- cUCGGCGCgCCgccgcgccagcgCCUGGGCcuugcgcagguccGCGUGCa- -3'
miRNA:   3'- aAGCUGCG-GGa-----------GGACCCG-------------UGCAUGac -5'
23781 5' -58.8 NC_005261.1 + 102189 0.67 0.700287
Target:  5'- aUCcGCGCgUUCUcGGGCGCGUGCg- -3'
miRNA:   3'- aAGcUGCGgGAGGaCCCGUGCAUGac -5'
23781 5' -58.8 NC_005261.1 + 86306 0.67 0.68924
Target:  5'- -aCGuCGCCCUCCagcgugcUGGcCACGUACUu -3'
miRNA:   3'- aaGCuGCGGGAGG-------ACCcGUGCAUGAc -5'
23781 5' -58.8 NC_005261.1 + 128505 0.67 0.687226
Target:  5'- cUCGACGCggcggcggaggcagCCUCCUGGcgGCugGagUGCUGc -3'
miRNA:   3'- aAGCUGCG--------------GGAGGACC--CGugC--AUGAC- -5'
23781 5' -58.8 NC_005261.1 + 120960 0.67 0.680159
Target:  5'- cUCG-CGCCC-CgCgGGGCGCGUGCc- -3'
miRNA:   3'- aAGCuGCGGGaG-GaCCCGUGCAUGac -5'
23781 5' -58.8 NC_005261.1 + 135309 0.67 0.680159
Target:  5'- -cCGGCGUgUcgcCCUGGGCGgcCGUGCUGg -3'
miRNA:   3'- aaGCUGCGgGa--GGACCCGU--GCAUGAC- -5'
23781 5' -58.8 NC_005261.1 + 123691 0.68 0.659875
Target:  5'- -cCGGCGCUCagCgUGGGCcGCGUACUc -3'
miRNA:   3'- aaGCUGCGGGa-GgACCCG-UGCAUGAc -5'
23781 5' -58.8 NC_005261.1 + 50913 0.68 0.649695
Target:  5'- aUCGGCGCCg-CCUcgccGGGCGCGggGCUc -3'
miRNA:   3'- aAGCUGCGGgaGGA----CCCGUGCa-UGAc -5'
23781 5' -58.8 NC_005261.1 + 89396 0.68 0.639502
Target:  5'- -gCGACcugccgccgGCCUUCCUcGGCGCGUGCg- -3'
miRNA:   3'- aaGCUG---------CGGGAGGAcCCGUGCAUGac -5'
23781 5' -58.8 NC_005261.1 + 32329 0.68 0.629303
Target:  5'- -gCGGCGCCCggcguggCCUGGGaCGCGgACc- -3'
miRNA:   3'- aaGCUGCGGGa------GGACCC-GUGCaUGac -5'
23781 5' -58.8 NC_005261.1 + 118811 0.68 0.619105
Target:  5'- gUgGGCGUCUgcgcCCUGGGCGCGgcACUGc -3'
miRNA:   3'- aAgCUGCGGGa---GGACCCGUGCa-UGAC- -5'
23781 5' -58.8 NC_005261.1 + 104908 0.68 0.608918
Target:  5'- --gGACGCCCUCCaGGGC-CGcGgUGa -3'
miRNA:   3'- aagCUGCGGGAGGaCCCGuGCaUgAC- -5'
23781 5' -58.8 NC_005261.1 + 75654 0.69 0.568411
Target:  5'- -cCGGCGCgUUCCUGGcGCGCGcGCa- -3'
miRNA:   3'- aaGCUGCGgGAGGACC-CGUGCaUGac -5'
23781 5' -58.8 NC_005261.1 + 69210 0.69 0.55838
Target:  5'- -aCGACGUCCUCCgGGaGCuguGCGcGCUGg -3'
miRNA:   3'- aaGCUGCGGGAGGaCC-CG---UGCaUGAC- -5'
23781 5' -58.8 NC_005261.1 + 117369 0.69 0.548399
Target:  5'- --aGGcCGCCCUCCUGGagGCGCGcUGCUu -3'
miRNA:   3'- aagCU-GCGGGAGGACC--CGUGC-AUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.