miRNA display CGI


Results 1 - 20 of 367 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23787 3' -59.2 NC_005261.1 + 133350 0.66 0.796712
Target:  5'- gCGCGGCGCUGCcgcgcagggcuUCGgcugccUGCGcGCGGCCc -3'
miRNA:   3'- aGCGUCGCGGUG-----------AGC------AUGC-CGCUGGc -5'
23787 3' -59.2 NC_005261.1 + 86593 0.66 0.796712
Target:  5'- -gGCGGCGCCGucCUUG-GCGuCGGCCGc -3'
miRNA:   3'- agCGUCGCGGU--GAGCaUGCcGCUGGC- -5'
23787 3' -59.2 NC_005261.1 + 2262 0.66 0.796712
Target:  5'- cCGcCGGCGCUcgucCUCGccggGCGGCG-CCGc -3'
miRNA:   3'- aGC-GUCGCGGu---GAGCa---UGCCGCuGGC- -5'
23787 3' -59.2 NC_005261.1 + 135063 0.66 0.796712
Target:  5'- -aGCGGCccGCCGCUUuc-CGGCGGCgGg -3'
miRNA:   3'- agCGUCG--CGGUGAGcauGCCGCUGgC- -5'
23787 3' -59.2 NC_005261.1 + 3642 0.66 0.796712
Target:  5'- -gGguGCGCCGCUagcgCGUcuggagcgcagGCcGCGGCCGg -3'
miRNA:   3'- agCguCGCGGUGA----GCA-----------UGcCGCUGGC- -5'
23787 3' -59.2 NC_005261.1 + 59044 0.66 0.796712
Target:  5'- cCGCcGCGCgaGCUCaGcGCGcGCGGCCGc -3'
miRNA:   3'- aGCGuCGCGg-UGAG-CaUGC-CGCUGGC- -5'
23787 3' -59.2 NC_005261.1 + 97751 0.66 0.796712
Target:  5'- -gGCGGgGCgGgCUCG-GCGGCGcgGCCGg -3'
miRNA:   3'- agCGUCgCGgU-GAGCaUGCCGC--UGGC- -5'
23787 3' -59.2 NC_005261.1 + 37194 0.66 0.796712
Target:  5'- -gGCGGCGCUGCUg--GCGGCGcuACUGu -3'
miRNA:   3'- agCGUCGCGGUGAgcaUGCCGC--UGGC- -5'
23787 3' -59.2 NC_005261.1 + 102467 0.66 0.796712
Target:  5'- gCGCAGgCGCCGgacCUCcu-CGGCGcGCCGc -3'
miRNA:   3'- aGCGUC-GCGGU---GAGcauGCCGC-UGGC- -5'
23787 3' -59.2 NC_005261.1 + 55924 0.66 0.796712
Target:  5'- cCGCAGcCGCCGC-CG-GCGcGCaGCCGu -3'
miRNA:   3'- aGCGUC-GCGGUGaGCaUGC-CGcUGGC- -5'
23787 3' -59.2 NC_005261.1 + 20571 0.66 0.787842
Target:  5'- gCGCAGCGgCGC-CG-GCGGCGcgggugGCCu -3'
miRNA:   3'- aGCGUCGCgGUGaGCaUGCCGC------UGGc -5'
23787 3' -59.2 NC_005261.1 + 131602 0.66 0.787842
Target:  5'- aCGCGcGCGCgCGCaCGUACGcGCGcCUGg -3'
miRNA:   3'- aGCGU-CGCG-GUGaGCAUGC-CGCuGGC- -5'
23787 3' -59.2 NC_005261.1 + 94224 0.66 0.787842
Target:  5'- -gGUAGaCGa-ACUCGaagGCGGCGACCa -3'
miRNA:   3'- agCGUC-GCggUGAGCa--UGCCGCUGGc -5'
23787 3' -59.2 NC_005261.1 + 9650 0.66 0.787842
Target:  5'- -gGCGGgGcCCACUCGgGCGGgCGcCCa -3'
miRNA:   3'- agCGUCgC-GGUGAGCaUGCC-GCuGGc -5'
23787 3' -59.2 NC_005261.1 + 59376 0.66 0.787842
Target:  5'- cCGcCAGCGCC-CgCGccACGGCG-CCGa -3'
miRNA:   3'- aGC-GUCGCGGuGaGCa-UGCCGCuGGC- -5'
23787 3' -59.2 NC_005261.1 + 64603 0.66 0.787842
Target:  5'- cUGCAGCaGCCGCcgCGcGCGaaGGCCGg -3'
miRNA:   3'- aGCGUCG-CGGUGa-GCaUGCcgCUGGC- -5'
23787 3' -59.2 NC_005261.1 + 116498 0.66 0.787842
Target:  5'- gCGCgguauaaagAGCGCCGC-CGcgGCGGCGcgaggcccGCCGc -3'
miRNA:   3'- aGCG---------UCGCGGUGaGCa-UGCCGC--------UGGC- -5'
23787 3' -59.2 NC_005261.1 + 80037 0.66 0.787842
Target:  5'- gUCGCcGuCGCCGC-CGUcgccacugGCGGCGGgCGc -3'
miRNA:   3'- -AGCGuC-GCGGUGaGCA--------UGCCGCUgGC- -5'
23787 3' -59.2 NC_005261.1 + 79986 0.66 0.787842
Target:  5'- cUGCAGCGCCgcgaACUCGgccgagcucACGGUGGucacCCGc -3'
miRNA:   3'- aGCGUCGCGG----UGAGCa--------UGCCGCU----GGC- -5'
23787 3' -59.2 NC_005261.1 + 82663 0.66 0.784257
Target:  5'- gCGCGGaugagcgccucgaGCCGCUCGUcgGGCGccACCGc -3'
miRNA:   3'- aGCGUCg------------CGGUGAGCAugCCGC--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.