miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23791 5' -62.2 NC_005261.1 + 92732 0.66 0.644394
Target:  5'- gGAGCgGGGCGgGgacaGCGAgCGcc-GCCCg -3'
miRNA:   3'- -CUCGgCCCGCgCa---CGCU-GCacaCGGG- -5'
23791 5' -62.2 NC_005261.1 + 50989 0.66 0.644394
Target:  5'- cGGCCGacggcGGCGCGUgggcGCGGCGggaGCUCg -3'
miRNA:   3'- cUCGGC-----CCGCGCA----CGCUGCacaCGGG- -5'
23791 5' -62.2 NC_005261.1 + 118946 0.66 0.644394
Target:  5'- cGGCUGGcCGCG-GCGcACGUG-GCCa -3'
miRNA:   3'- cUCGGCCcGCGCaCGC-UGCACaCGGg -5'
23791 5' -62.2 NC_005261.1 + 72330 0.66 0.644394
Target:  5'- cGGCCcaaGGCaGUGgaugGCGaACGUGUGCaCCg -3'
miRNA:   3'- cUCGGc--CCG-CGCa---CGC-UGCACACG-GG- -5'
23791 5' -62.2 NC_005261.1 + 4827 0.66 0.634549
Target:  5'- -cGuuGGGCGCaGgcgGCGGCGUccGCgCCg -3'
miRNA:   3'- cuCggCCCGCG-Ca--CGCUGCAcaCG-GG- -5'
23791 5' -62.2 NC_005261.1 + 107678 0.66 0.634549
Target:  5'- -cGCCGGGCGUugccgccGCGGCGgggGCgCCg -3'
miRNA:   3'- cuCGGCCCGCGca-----CGCUGCacaCG-GG- -5'
23791 5' -62.2 NC_005261.1 + 18769 0.66 0.633564
Target:  5'- aGGGCCaGGGCaacagcaGCG-GCGAgG-GUGCCg -3'
miRNA:   3'- -CUCGG-CCCG-------CGCaCGCUgCaCACGGg -5'
23791 5' -62.2 NC_005261.1 + 97953 0.66 0.624703
Target:  5'- cGGCaacgaGGGagGUG-GCGGCGgagcgGUGCCCg -3'
miRNA:   3'- cUCGg----CCCg-CGCaCGCUGCa----CACGGG- -5'
23791 5' -62.2 NC_005261.1 + 74339 0.66 0.624703
Target:  5'- cGAGaCCGcaGGCGCG-GCGGCGgaagGggcgGCCg -3'
miRNA:   3'- -CUC-GGC--CCGCGCaCGCUGCa---Ca---CGGg -5'
23791 5' -62.2 NC_005261.1 + 97749 0.66 0.624703
Target:  5'- gGGGCgGGGCGgGcucgGCGGCGcG-GCCg -3'
miRNA:   3'- -CUCGgCCCGCgCa---CGCUGCaCaCGGg -5'
23791 5' -62.2 NC_005261.1 + 133337 0.66 0.624703
Target:  5'- -uGCCGGcacGCGCGcGCGGCGc-UGCCg -3'
miRNA:   3'- cuCGGCC---CGCGCaCGCUGCacACGGg -5'
23791 5' -62.2 NC_005261.1 + 4662 0.66 0.624703
Target:  5'- -uGUCGGcCGCG-GCGGCGgcgGCCCc -3'
miRNA:   3'- cuCGGCCcGCGCaCGCUGCacaCGGG- -5'
23791 5' -62.2 NC_005261.1 + 127629 0.66 0.624703
Target:  5'- cGGCCGGaCGCGacgGCGGCG-GcGCCg -3'
miRNA:   3'- cUCGGCCcGCGCa--CGCUGCaCaCGGg -5'
23791 5' -62.2 NC_005261.1 + 37275 0.66 0.614861
Target:  5'- cGAGCCGuGcCGCG-GCGACcUGUuGCUCg -3'
miRNA:   3'- -CUCGGCcC-GCGCaCGCUGcACA-CGGG- -5'
23791 5' -62.2 NC_005261.1 + 29955 0.66 0.614861
Target:  5'- -uGCCGcgaGGCGCuagagGCGGCGcgGUGCgCCg -3'
miRNA:   3'- cuCGGC---CCGCGca---CGCUGCa-CACG-GG- -5'
23791 5' -62.2 NC_005261.1 + 60703 0.66 0.614861
Target:  5'- -cGCCGcGCGUGgcgGCGcACGgcgGUGCCa -3'
miRNA:   3'- cuCGGCcCGCGCa--CGC-UGCa--CACGGg -5'
23791 5' -62.2 NC_005261.1 + 17167 0.66 0.614861
Target:  5'- --cCCGcGGCGCGgGCGugGgcaGCCCu -3'
miRNA:   3'- cucGGC-CCGCGCaCGCugCacaCGGG- -5'
23791 5' -62.2 NC_005261.1 + 37942 0.66 0.614861
Target:  5'- -cGCCGGaGcCGCGUcgaGCGG-GUGcUGCCCc -3'
miRNA:   3'- cuCGGCC-C-GCGCA---CGCUgCAC-ACGGG- -5'
23791 5' -62.2 NC_005261.1 + 13129 0.66 0.614861
Target:  5'- -cGCgGGGCGCGUGUGGuCgGUGacgGCgCg -3'
miRNA:   3'- cuCGgCCCGCGCACGCU-G-CACa--CGgG- -5'
23791 5' -62.2 NC_005261.1 + 29801 0.66 0.605032
Target:  5'- aGGCCGGcGC-CG-GCGGCGcggGcGCCCg -3'
miRNA:   3'- cUCGGCC-CGcGCaCGCUGCa--CaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.