miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 38914 0.66 0.743664
Target:  5'- cGGCGCGCGGGcccgcgcgccaagccGgcggccGGGCggGCCGcgGCGCg -3'
miRNA:   3'- -CUGUGCGUCC---------------U------UCCG--CGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 36648 0.66 0.739786
Target:  5'- cGGCGCGCGGGcuuGGGGCcagggucgaacGCUGGggcgGUGCUg -3'
miRNA:   3'- -CUGUGCGUCC---UUCCG-----------CGGCUa---CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 136479 0.66 0.748489
Target:  5'- cGCGCGCGGGcAGcagcgagcagcucGGCGCCGAcGCcuGCUc -3'
miRNA:   3'- cUGUGCGUCC-UU-------------CCGCGGCUaCG--CGA- -5'
23794 3' -58.8 NC_005261.1 + 73711 0.66 0.759013
Target:  5'- --gGCGCAGGAccGCgGUCGGcgUGCGCg -3'
miRNA:   3'- cugUGCGUCCUucCG-CGGCU--ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 56173 0.66 0.749451
Target:  5'- gGGCcCGCGGGGAGGa--CGAcGCGCg -3'
miRNA:   3'- -CUGuGCGUCCUUCCgcgGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 118550 0.66 0.730029
Target:  5'- cGGCGCGCGcGAGGaCGCCGugcccGCGCg -3'
miRNA:   3'- -CUGUGCGUcCUUCcGCGGCua---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 120942 0.66 0.759013
Target:  5'- --gGCGCGGGAAGGUGgaggcucgcgccCCGcgggGCGCg -3'
miRNA:   3'- cugUGCGUCCUUCCGC------------GGCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 123654 0.66 0.749451
Target:  5'- -cCACGCccAGGAAGGcCGCUGucaucucGCGCa -3'
miRNA:   3'- cuGUGCG--UCCUUCC-GCGGCua-----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 2148 0.66 0.749451
Target:  5'- cGGCGCGCccguccAGGAcccggcccAGGCGUgCGAgucgGCGCUc -3'
miRNA:   3'- -CUGUGCG------UCCU--------UCCGCG-GCUa---CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 60826 0.66 0.749451
Target:  5'- -uCAUGCAGGAGaucaucggcGGCGgCGAggucGCGCg -3'
miRNA:   3'- cuGUGCGUCCUU---------CCGCgGCUa---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 104038 0.66 0.739786
Target:  5'- -cCGCGCAGGAAGuacUGCCGcaGCGCc -3'
miRNA:   3'- cuGUGCGUCCUUCc--GCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 116494 0.66 0.749451
Target:  5'- gGGCGCGCGGuauaAAGaGCGCCGccgcggcgGCGCg -3'
miRNA:   3'- -CUGUGCGUCc---UUC-CGCGGCua------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 98734 0.66 0.739786
Target:  5'- gGGCACGCGGccgcgcGGGCGuuGGccGCGCg -3'
miRNA:   3'- -CUGUGCGUCcu----UCCGCggCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 30184 0.66 0.730029
Target:  5'- uGCGCGCc--GAGGCgGCCGccGCGCUg -3'
miRNA:   3'- cUGUGCGuccUUCCG-CGGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 9624 0.66 0.759013
Target:  5'- gGGCAgGCGGGGguGGGgGCUGgGUGgGCg -3'
miRNA:   3'- -CUGUgCGUCCU--UCCgCGGC-UACgCGa -5'
23794 3' -58.8 NC_005261.1 + 11048 0.66 0.749451
Target:  5'- cGGCACuCGGGcgccgcccAGGCGCCGccaGCGCg -3'
miRNA:   3'- -CUGUGcGUCCu-------UCCGCGGCua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 97218 0.66 0.749451
Target:  5'- -cCACGCucGGAGGCGCUG--GCGCc -3'
miRNA:   3'- cuGUGCGucCUUCCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 39784 0.66 0.730029
Target:  5'- gGACGuCGCcGGggGGCGgCGcgGcCGCc -3'
miRNA:   3'- -CUGU-GCGuCCuuCCGCgGCuaC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 71965 0.66 0.759013
Target:  5'- --gGCGCGGGGcgcggAGcGCGCggcaGGUGCGCa -3'
miRNA:   3'- cugUGCGUCCU-----UC-CGCGg---CUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 2533 0.66 0.739786
Target:  5'- cGGCA-GUAGGccGccaGCGCCGcgGCGCUg -3'
miRNA:   3'- -CUGUgCGUCCuuC---CGCGGCuaCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.