miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 94157 0.65 0.775008
Target:  5'- aGCGCcCGGGucgcgAAGGCGCCcaccagcguggcgcGGUGCGCg -3'
miRNA:   3'- cUGUGcGUCC-----UUCCGCGG--------------CUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 29865 0.66 0.739786
Target:  5'- -cCGCGCGGcGccGGCGCCGcUGcCGCc -3'
miRNA:   3'- cuGUGCGUC-CuuCCGCGGCuAC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 104038 0.66 0.739786
Target:  5'- -cCGCGCAGGAAGuacUGCCGcaGCGCc -3'
miRNA:   3'- cuGUGCGUCCUUCc--GCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 38914 0.66 0.743664
Target:  5'- cGGCGCGCGGGcccgcgcgccaagccGgcggccGGGCggGCCGcgGCGCg -3'
miRNA:   3'- -CUGUGCGUCC---------------U------UCCG--CGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 66918 0.66 0.739786
Target:  5'- -gUACGUgcccAGGAGGGCGUCGAagGCGg- -3'
miRNA:   3'- cuGUGCG----UCCUUCCGCGGCUa-CGCga -5'
23794 3' -58.8 NC_005261.1 + 133265 0.66 0.730029
Target:  5'- cGGCGCGCgAGuaccAGGGCGCCG--GCGCc -3'
miRNA:   3'- -CUGUGCG-UCc---UUCCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 87476 0.66 0.739786
Target:  5'- cGCGCGuCAGGuucGGCGCgGccGUGCUg -3'
miRNA:   3'- cUGUGC-GUCCuu-CCGCGgCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 36648 0.66 0.739786
Target:  5'- cGGCGCGCGGGcuuGGGGCcagggucgaacGCUGGggcgGUGCUg -3'
miRNA:   3'- -CUGUGCGUCC---UUCCG-----------CGGCUa---CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 106566 0.66 0.739786
Target:  5'- cGGCGCGCGccGGccccGGGGcCGCCGcgcgGCGCUc -3'
miRNA:   3'- -CUGUGCGU--CC----UUCC-GCGGCua--CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 30184 0.66 0.730029
Target:  5'- uGCGCGCc--GAGGCgGCCGccGCGCUg -3'
miRNA:   3'- cUGUGCGuccUUCCG-CGGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 97633 0.66 0.739786
Target:  5'- aGCGgGCGGaGcGGGCGCgGGUGcCGCa -3'
miRNA:   3'- cUGUgCGUC-CuUCCGCGgCUAC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 98734 0.66 0.739786
Target:  5'- gGGCACGCGGccgcgcGGGCGuuGGccGCGCg -3'
miRNA:   3'- -CUGUGCGUCcu----UCCGCggCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 29212 0.66 0.738815
Target:  5'- gGGCGCGCgacuGGGGcccgcgcAGGCuacGCCGcgGCGCc -3'
miRNA:   3'- -CUGUGCG----UCCU-------UCCG---CGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 31627 0.66 0.739786
Target:  5'- cGCgACGCGGGAccuGGCcuuCCGcgGCGCg -3'
miRNA:   3'- cUG-UGCGUCCUu--CCGc--GGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 94337 0.66 0.738815
Target:  5'- -uCGCGCcGGuAGGCGUCGAUcguccggcacacaGCGCa -3'
miRNA:   3'- cuGUGCGuCCuUCCGCGGCUA-------------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 53324 0.66 0.730029
Target:  5'- aGGC-CGCAGGuguGCGCCucUGCGCc -3'
miRNA:   3'- -CUGuGCGUCCuucCGCGGcuACGCGa -5'
23794 3' -58.8 NC_005261.1 + 118550 0.66 0.730029
Target:  5'- cGGCGCGCGcGAGGaCGCCGugcccGCGCg -3'
miRNA:   3'- -CUGUGCGUcCUUCcGCGGCua---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 2533 0.66 0.739786
Target:  5'- cGGCA-GUAGGccGccaGCGCCGcgGCGCUg -3'
miRNA:   3'- -CUGUgCGUCCuuC---CGCGGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 39784 0.66 0.730029
Target:  5'- gGACGuCGCcGGggGGCGgCGcgGcCGCc -3'
miRNA:   3'- -CUGU-GCGuCCuuCCGCgGCuaC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 136479 0.66 0.748489
Target:  5'- cGCGCGCGGGcAGcagcgagcagcucGGCGCCGAcGCcuGCUc -3'
miRNA:   3'- cUGUGCGUCC-UU-------------CCGCGGCUaCG--CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.