miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 94157 0.65 0.775008
Target:  5'- aGCGCcCGGGucgcgAAGGCGCCcaccagcguggcgcGGUGCGCg -3'
miRNA:   3'- cUGUGcGUCC-----UUCCGCGG--------------CUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 82171 0.74 0.320642
Target:  5'- aGCGCgGCGcGGAAGGCGCgGcGUGCGCa -3'
miRNA:   3'- cUGUG-CGU-CCUUCCGCGgC-UACGCGa -5'
23794 3' -58.8 NC_005261.1 + 44723 0.74 0.327986
Target:  5'- cGCGCGCAGGGcgcugcagcuGGGCcCCGAgcUGCGCg -3'
miRNA:   3'- cUGUGCGUCCU----------UCCGcGGCU--ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 45942 0.74 0.327986
Target:  5'- cGCGCGCgAGGGccgccaGGGCGCCGuugagcAUGCGCg -3'
miRNA:   3'- cUGUGCG-UCCU------UCCGCGGC------UACGCGa -5'
23794 3' -58.8 NC_005261.1 + 94261 0.73 0.349207
Target:  5'- --gGCGCAGGgcGGCGCCGcgaggcucuugGCGCa -3'
miRNA:   3'- cugUGCGUCCuuCCGCGGCua---------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 83353 0.73 0.350759
Target:  5'- uGGCcCGCAGGAAGGCGUccacgucggCGA-GCGCg -3'
miRNA:   3'- -CUGuGCGUCCUUCCGCG---------GCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 119988 0.73 0.350759
Target:  5'- cGGCcgACGCuGGAGGGCGCCGGcuacgcggccgUGUGCc -3'
miRNA:   3'- -CUG--UGCGuCCUUCCGCGGCU-----------ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 71468 0.73 0.358596
Target:  5'- aGCAU-CAGGAAGGCcucCCGGUGCGCg -3'
miRNA:   3'- cUGUGcGUCCUUCCGc--GGCUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 58292 0.73 0.358596
Target:  5'- cGGCGCGCcGGggGGCGCgGGgaggGgGCg -3'
miRNA:   3'- -CUGUGCGuCCuuCCGCGgCUa---CgCGa -5'
23794 3' -58.8 NC_005261.1 + 108729 0.74 0.306326
Target:  5'- aGCGCGCGGGccagcggcGGCGCCGcgGCGUc -3'
miRNA:   3'- cUGUGCGUCCuu------CCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 30371 0.74 0.306326
Target:  5'- cGGCGCGCc---GGGCGCCGcgGCGCg -3'
miRNA:   3'- -CUGUGCGuccuUCCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 10440 0.74 0.306326
Target:  5'- gGACGCGUgcuGGGAGGCGCUGcUGCaGCUc -3'
miRNA:   3'- -CUGUGCGu--CCUUCCGCGGCuACG-CGA- -5'
23794 3' -58.8 NC_005261.1 + 99555 0.78 0.183881
Target:  5'- cGGCGCGcCAGGAAGGCGUCGuagcucugggccUGCGCg -3'
miRNA:   3'- -CUGUGC-GUCCUUCCGCGGCu-----------ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 43783 0.76 0.235182
Target:  5'- cGGCGCGC-GGAGGGCGCCGcgggugaggggGCGCc -3'
miRNA:   3'- -CUGUGCGuCCUUCCGCGGCua---------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 127634 0.76 0.236322
Target:  5'- gGACGCGaCGGcGgcGGCGCCGGgggGCGCg -3'
miRNA:   3'- -CUGUGC-GUC-CuuCCGCGGCUa--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 1842 0.76 0.253973
Target:  5'- cGGCGCGCGcGAAGGCGCCGGgcccgaagacGCGCc -3'
miRNA:   3'- -CUGUGCGUcCUUCCGCGGCUa---------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 87423 0.75 0.279174
Target:  5'- gGGCGCGcCGGcGAAGGCGCCGAagccgaaGCGCc -3'
miRNA:   3'- -CUGUGC-GUC-CUUCCGCGGCUa------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 67831 0.75 0.285778
Target:  5'- cGCGCGCAGGAGGGCcgcacucuccggGCCGA-GCuGCUc -3'
miRNA:   3'- cUGUGCGUCCUUCCG------------CGGCUaCG-CGA- -5'
23794 3' -58.8 NC_005261.1 + 33018 0.75 0.292504
Target:  5'- --gGgGgAGGggGGCGCCGAUGCGg- -3'
miRNA:   3'- cugUgCgUCCuuCCGCGGCUACGCga -5'
23794 3' -58.8 NC_005261.1 + 100958 0.75 0.292504
Target:  5'- cGGCGCGCGcggucucguGGAAGGCGCCca-GCGCg -3'
miRNA:   3'- -CUGUGCGU---------CCUUCCGCGGcuaCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.