miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 74 0.73 0.374634
Target:  5'- cGCGCGCGGGGgcgGGGUGCgGG-GCGCg -3'
miRNA:   3'- cUGUGCGUCCU---UCCGCGgCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 1842 0.76 0.253973
Target:  5'- cGGCGCGCGcGAAGGCGCCGGgcccgaagacGCGCc -3'
miRNA:   3'- -CUGUGCGUcCUUCCGCGGCUa---------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 2148 0.66 0.749451
Target:  5'- cGGCGCGCccguccAGGAcccggcccAGGCGUgCGAgucgGCGCUc -3'
miRNA:   3'- -CUGUGCG------UCCU--------UCCGCG-GCUa---CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 2533 0.66 0.739786
Target:  5'- cGGCA-GUAGGccGccaGCGCCGcgGCGCUg -3'
miRNA:   3'- -CUGUgCGUCCuuC---CGCGGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 2589 0.67 0.690247
Target:  5'- cGGCACGCGgcGGAAGcCGCCGucgGCGg- -3'
miRNA:   3'- -CUGUGCGU--CCUUCcGCGGCua-CGCga -5'
23794 3' -58.8 NC_005261.1 + 2644 0.67 0.71027
Target:  5'- aGCACGCGGGcGGGCagcggcggcucCCGccGCGCUg -3'
miRNA:   3'- cUGUGCGUCCuUCCGc----------GGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 3552 0.69 0.578488
Target:  5'- aGCGCgGCGGGcgcGGCGCCGcuaagGCGCg -3'
miRNA:   3'- cUGUG-CGUCCuu-CCGCGGCua---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 3722 0.67 0.71027
Target:  5'- aGACGCGCcgcugccGGAc-GCGCCGGcgGCGCa -3'
miRNA:   3'- -CUGUGCGu------CCUucCGCGGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 3842 0.67 0.720187
Target:  5'- cGCugGCGGcAGcGGCGCCGGcgccGCGCg -3'
miRNA:   3'- cUGugCGUCcUU-CCGCGGCUa---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 3883 0.67 0.670032
Target:  5'- cGGCGCGCAGcucGGCGagCGcgGCGCg -3'
miRNA:   3'- -CUGUGCGUCcuuCCGCg-GCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 4391 0.71 0.461733
Target:  5'- cGCACGCGgccGGgcGGCGgCGgcGCGCUg -3'
miRNA:   3'- cUGUGCGU---CCuuCCGCgGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 4529 0.71 0.480411
Target:  5'- gGGCGcCGCGGcGAGGGCGCCGG-GCcCUg -3'
miRNA:   3'- -CUGU-GCGUC-CUUCCGCGGCUaCGcGA- -5'
23794 3' -58.8 NC_005261.1 + 5488 0.67 0.719198
Target:  5'- cGCGCGCcGGggGGUagcugggGCCGcgGCaGCg -3'
miRNA:   3'- cUGUGCGuCCuuCCG-------CGGCuaCG-CGa -5'
23794 3' -58.8 NC_005261.1 + 5541 0.72 0.407274
Target:  5'- cGGCGCGCAgcgagacGGggGGCGCcCGAgcgGCGg- -3'
miRNA:   3'- -CUGUGCGU-------CCuuCCGCG-GCUa--CGCga -5'
23794 3' -58.8 NC_005261.1 + 5799 0.69 0.55838
Target:  5'- aGAuCGCGaggaAGGAAgcucggcagcGGCgGCCGAUGCGCg -3'
miRNA:   3'- -CU-GUGCg---UCCUU----------CCG-CGGCUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 9624 0.66 0.759013
Target:  5'- gGGCAgGCGGGGguGGGgGCUGgGUGgGCg -3'
miRNA:   3'- -CUGUgCGUCCU--UCCgCGGC-UACgCGa -5'
23794 3' -58.8 NC_005261.1 + 10440 0.74 0.306326
Target:  5'- gGACGCGUgcuGGGAGGCGCUGcUGCaGCUc -3'
miRNA:   3'- -CUGUGCGu--CCUUCCGCGGCuACG-CGA- -5'
23794 3' -58.8 NC_005261.1 + 11048 0.66 0.749451
Target:  5'- cGGCACuCGGGcgccgcccAGGCGCCGccaGCGCg -3'
miRNA:   3'- -CUGUGcGUCCu-------UCCGCGGCua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 11103 0.69 0.568411
Target:  5'- gGACGCGaCGGGAcgAGauGCGCCGGcagcgUGCGCc -3'
miRNA:   3'- -CUGUGC-GUCCU--UC--CGCGGCU-----ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 13652 0.71 0.438038
Target:  5'- cGCGCGCcgugccgccgccgcgGGGggGGCGCgGG-GCGCg -3'
miRNA:   3'- cUGUGCG---------------UCCuuCCGCGgCUaCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.