miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 110531 0.73 0.366554
Target:  5'- cGGgGCGCAGGAGGGCGC----GCGCa -3'
miRNA:   3'- -CUgUGCGUCCUUCCGCGgcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 74 0.73 0.374634
Target:  5'- cGCGCGCGGGGgcgGGGUGCgGG-GCGCg -3'
miRNA:   3'- cUGUGCGUCCU---UCCGCGgCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 59023 0.73 0.374634
Target:  5'- cGGCGcCGcCAGGAacGGGUGCCGccGCGCg -3'
miRNA:   3'- -CUGU-GC-GUCCU--UCCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 137757 0.73 0.374634
Target:  5'- cGCGCGCGGGGgcgGGGUGCgGG-GCGCg -3'
miRNA:   3'- cUGUGCGUCCU---UCCGCGgCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 124245 0.72 0.382832
Target:  5'- cGC-CGCGGGcAGGCGCCGcgcgGCGCc -3'
miRNA:   3'- cUGuGCGUCCuUCCGCGGCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 70217 0.72 0.382832
Target:  5'- gGGCAUGCuGGAGuuGGCGCCGc-GCGCa -3'
miRNA:   3'- -CUGUGCGuCCUU--CCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 31417 0.72 0.382832
Target:  5'- cGACcCGCugcccGGGGAGGCGCUGGcgGCGCc -3'
miRNA:   3'- -CUGuGCG-----UCCUUCCGCGGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 105121 0.72 0.39115
Target:  5'- -cCGCGCGGGcgcGGGcCGCCGgcGCGCg -3'
miRNA:   3'- cuGUGCGUCCu--UCC-GCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 5541 0.72 0.407274
Target:  5'- cGGCGCGCAgcgagacGGggGGCGCcCGAgcgGCGg- -3'
miRNA:   3'- -CUGUGCGU-------CCuuCCGCG-GCUa--CGCga -5'
23794 3' -58.8 NC_005261.1 + 49235 0.72 0.416797
Target:  5'- cGCGCGCAGGucGGcCGCCGccGCGg- -3'
miRNA:   3'- cUGUGCGUCCuuCC-GCGGCuaCGCga -5'
23794 3' -58.8 NC_005261.1 + 46808 0.72 0.425571
Target:  5'- cGGCGCGCGcGGAuGGCGCgCGccagGCGCg -3'
miRNA:   3'- -CUGUGCGU-CCUuCCGCG-GCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 69230 0.72 0.425571
Target:  5'- uGCGCGCuGGGgcGGUucGCCGAgGCGCUg -3'
miRNA:   3'- cUGUGCG-UCCuuCCG--CGGCUaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 44266 0.72 0.425571
Target:  5'- cGGCGCGCGGGggGGCGgggcCCGccGCcaGCg -3'
miRNA:   3'- -CUGUGCGUCCuuCCGC----GGCuaCG--CGa -5'
23794 3' -58.8 NC_005261.1 + 38311 0.72 0.425571
Target:  5'- aGCGCGCAGGgcGGC-CCGAUGgUGUUc -3'
miRNA:   3'- cUGUGCGUCCuuCCGcGGCUAC-GCGA- -5'
23794 3' -58.8 NC_005261.1 + 94573 0.72 0.425571
Target:  5'- cGCgACGUAGG-GGGCGCCGAacGCGCc -3'
miRNA:   3'- cUG-UGCGUCCuUCCGCGGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 58796 0.71 0.434455
Target:  5'- cGCGCGCAGGAAGGCcgGCaCGcgccGCGCc -3'
miRNA:   3'- cUGUGCGUCCUUCCG--CG-GCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 74501 0.71 0.434455
Target:  5'- cGGCGCucuuCGGGgcGGCGCCGGggccaugGCGCUu -3'
miRNA:   3'- -CUGUGc---GUCCuuCCGCGGCUa------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 13652 0.71 0.438038
Target:  5'- cGCGCGCcgugccgccgccgcgGGGggGGCGCgGG-GCGCg -3'
miRNA:   3'- cUGUGCG---------------UCCuuCCGCGgCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 68594 0.71 0.443445
Target:  5'- gGGC-CGCGGGAGcGGgGCCGAcgGCGUg -3'
miRNA:   3'- -CUGuGCGUCCUU-CCgCGGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 103869 0.71 0.443445
Target:  5'- cGGCG-GCGGGgcGGCGCCGccgggcgGCGCg -3'
miRNA:   3'- -CUGUgCGUCCuuCCGCGGCua-----CGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.