miRNA display CGI


Results 41 - 60 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 94337 0.66 0.738815
Target:  5'- -uCGCGCcGGuAGGCGUCGAUcguccggcacacaGCGCa -3'
miRNA:   3'- cuGUGCGuCCuUCCGCGGCUA-------------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 29212 0.66 0.738815
Target:  5'- gGGCGCGCgacuGGGGcccgcgcAGGCuacGCCGcgGCGCc -3'
miRNA:   3'- -CUGUGCG----UCCU-------UCCG---CGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 32267 0.66 0.730029
Target:  5'- cGCACGCc--GAGGCGCCGccgcugGUGCUg -3'
miRNA:   3'- cUGUGCGuccUUCCGCGGCua----CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 133265 0.66 0.730029
Target:  5'- cGGCGCGCgAGuaccAGGGCGCCG--GCGCc -3'
miRNA:   3'- -CUGUGCG-UCc---UUCCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 118550 0.66 0.730029
Target:  5'- cGGCGCGCGcGAGGaCGCCGugcccGCGCg -3'
miRNA:   3'- -CUGUGCGUcCUUCcGCGGCua---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 53324 0.66 0.730029
Target:  5'- aGGC-CGCAGGuguGCGCCucUGCGCc -3'
miRNA:   3'- -CUGuGCGUCCuucCGCGGcuACGCGa -5'
23794 3' -58.8 NC_005261.1 + 39784 0.66 0.730029
Target:  5'- gGACGuCGCcGGggGGCGgCGcgGcCGCc -3'
miRNA:   3'- -CUGU-GCGuCCuuCCGCgGCuaC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 30184 0.66 0.730029
Target:  5'- uGCGCGCc--GAGGCgGCCGccGCGCUg -3'
miRNA:   3'- cUGUGCGuccUUCCG-CGGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 80063 0.67 0.720187
Target:  5'- cGGCGgGCGcGGggGGCGUgGggGaCGCg -3'
miRNA:   3'- -CUGUgCGU-CCuuCCGCGgCuaC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 93353 0.67 0.720187
Target:  5'- cGCGCGCAGcgc-GCGCCaGUGCGCc -3'
miRNA:   3'- cUGUGCGUCcuucCGCGGcUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 115148 0.67 0.720187
Target:  5'- uACACGagcCGGGGgucGGGCGCCuccUGCGCg -3'
miRNA:   3'- cUGUGC---GUCCU---UCCGCGGcu-ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 82114 0.67 0.720187
Target:  5'- uGCGCGUcgaAGGu-GGCGuCCGAgGCGCg -3'
miRNA:   3'- cUGUGCG---UCCuuCCGC-GGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 59429 0.67 0.720187
Target:  5'- -uCGCGCGgcccGGcAGGCGCCGGcagcaGCGCg -3'
miRNA:   3'- cuGUGCGU----CCuUCCGCGGCUa----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 93680 0.67 0.720187
Target:  5'- cGGCgGCGCcGGcGGGGCGCCGGcggGUGCc -3'
miRNA:   3'- -CUG-UGCGuCC-UUCCGCGGCUa--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 125068 0.67 0.720187
Target:  5'- uGGCGCGCAGGuGGGCcGUcaaguagucuugCGggGCGCc -3'
miRNA:   3'- -CUGUGCGUCCuUCCG-CG------------GCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 125279 0.67 0.720187
Target:  5'- gGGC-CGCuGGAagucaggccgcGGGCGCCGGacccgcggGCGCUc -3'
miRNA:   3'- -CUGuGCGuCCU-----------UCCGCGGCUa-------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 130512 0.67 0.720187
Target:  5'- cGugGCGCAGGc--GCugGCCGAaGCGCg -3'
miRNA:   3'- -CugUGCGUCCuucCG--CGGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 3842 0.67 0.720187
Target:  5'- cGCugGCGGcAGcGGCGCCGGcgccGCGCg -3'
miRNA:   3'- cUGugCGUCcUU-CCGCGGCUa---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 95654 0.67 0.720187
Target:  5'- cGACGCGCGGcgccgcGAcGGGCGCgGGUGUGa- -3'
miRNA:   3'- -CUGUGCGUC------CU-UCCGCGgCUACGCga -5'
23794 3' -58.8 NC_005261.1 + 5488 0.67 0.719198
Target:  5'- cGCGCGCcGGggGGUagcugggGCCGcgGCaGCg -3'
miRNA:   3'- cUGUGCGuCCuuCCG-------CGGCuaCG-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.