miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 32149 0.66 0.93045
Target:  5'- -gGGCucGGCG-CGCCGCUGCGGccgguGUACc -3'
miRNA:   3'- aaUCG--UCGCaGCGGCGGUGUUu----CAUG- -5'
23794 5' -53.8 NC_005261.1 + 71994 0.66 0.919164
Target:  5'- --cGCAGCGUCGCCccugGCCuuaacgcCGGGGgcgACg -3'
miRNA:   3'- aauCGUCGCAGCGG----CGGu------GUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 31297 0.66 0.93045
Target:  5'- --cGCGGCc-CGCCGCCGCGcGGgGCc -3'
miRNA:   3'- aauCGUCGcaGCGGCGGUGUuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 103965 0.66 0.913132
Target:  5'- --cGCGGCG--GCCGCCACAcggAAGcGCu -3'
miRNA:   3'- aauCGUCGCagCGGCGGUGU---UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 1833 0.66 0.935702
Target:  5'- -aAGCGGCcUCGgCGCgCGCGAAG-GCg -3'
miRNA:   3'- aaUCGUCGcAGCgGCG-GUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 100662 0.66 0.935702
Target:  5'- -cGGCGcGCGUCGCgggguuCGCgCGC-GAGUGCa -3'
miRNA:   3'- aaUCGU-CGCAGCG------GCG-GUGuUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 33465 0.66 0.935702
Target:  5'- --cGCAGC--CGCCGCCGCAGccGGg-- -3'
miRNA:   3'- aauCGUCGcaGCGGCGGUGUU--UCaug -5'
23794 5' -53.8 NC_005261.1 + 102695 0.66 0.93045
Target:  5'- --cGCGGcCGUCGCUGCCGCc------ -3'
miRNA:   3'- aauCGUC-GCAGCGGCGGUGuuucaug -5'
23794 5' -53.8 NC_005261.1 + 14743 0.66 0.933632
Target:  5'- gUGGCAGgGgcgaucggcgccgCGCCGCgACAGGGggGCc -3'
miRNA:   3'- aAUCGUCgCa------------GCGGCGgUGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 135428 0.66 0.919164
Target:  5'- -gAGguGCGcUCGCaCGCCGCccAGgcgGCg -3'
miRNA:   3'- aaUCguCGC-AGCG-GCGGUGuuUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 4003 0.66 0.919164
Target:  5'- gUAGCGGCGgcUCauggccacgcagGCCGCCAC---GUGCg -3'
miRNA:   3'- aAUCGUCGC--AG------------CGGCGGUGuuuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 32267 0.66 0.924937
Target:  5'- --cGCAcGCcgaggCGCCGCCGCu-GGUGCu -3'
miRNA:   3'- aauCGU-CGca---GCGGCGGUGuuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 98309 0.66 0.924937
Target:  5'- -cGGgGGCGggCGCCGCCGCcagcgGCg -3'
miRNA:   3'- aaUCgUCGCa-GCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 4468 0.66 0.924937
Target:  5'- -cGGCGGCccGUCGCgcggCGCCGCGgcGUAg -3'
miRNA:   3'- aaUCGUCG--CAGCG----GCGGUGUuuCAUg -5'
23794 5' -53.8 NC_005261.1 + 12337 0.67 0.906841
Target:  5'- cUUGGcCGGCGcggcCGCCGCCGCGGcg-GCa -3'
miRNA:   3'- -AAUC-GUCGCa---GCGGCGGUGUUucaUG- -5'
23794 5' -53.8 NC_005261.1 + 14349 0.67 0.906841
Target:  5'- -cAGCAGCGgcagcaGCCGCgGCcGGGgcgGCg -3'
miRNA:   3'- aaUCGUCGCag----CGGCGgUGuUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 108452 0.67 0.906841
Target:  5'- -gAGCAGCG-CGUCGUCgGCGAGGa-- -3'
miRNA:   3'- aaUCGUCGCaGCGGCGG-UGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 16394 0.67 0.906841
Target:  5'- --cGCcGuCGUCGUCGCCGgGcGGUGCg -3'
miRNA:   3'- aauCGuC-GCAGCGGCGGUgUuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 75589 0.67 0.902944
Target:  5'- --cGCGGCGcucgCGCgCGCCGCGGAcgcggacggcgucgcGUACg -3'
miRNA:   3'- aauCGUCGCa---GCG-GCGGUGUUU---------------CAUG- -5'
23794 5' -53.8 NC_005261.1 + 101781 0.67 0.906841
Target:  5'- -cAGCGcGCGU-GCCGCCcgGCGGGGcUGCg -3'
miRNA:   3'- aaUCGU-CGCAgCGGCGG--UGUUUC-AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.