miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 66448 0.65 0.938729
Target:  5'- --cGCGGCGcgCGCCGCCGgucccgcCAGgcgcgcguccucgcGGUACa -3'
miRNA:   3'- aauCGUCGCa-GCGGCGGU-------GUU--------------UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 28804 0.66 0.919164
Target:  5'- --cGCGGCGgaggcaGCCGCCGcCGAAGccgagGCg -3'
miRNA:   3'- aauCGUCGCag----CGGCGGU-GUUUCa----UG- -5'
23794 5' -53.8 NC_005261.1 + 107726 0.66 0.93045
Target:  5'- -cGGCAgGCGgcugCGCCucgGCCGCGGGGgggGCc -3'
miRNA:   3'- aaUCGU-CGCa---GCGG---CGGUGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 113569 0.66 0.919164
Target:  5'- -gAGCAGUggucgGUgGCCGCCGCGcuGgGCg -3'
miRNA:   3'- aaUCGUCG-----CAgCGGCGGUGUuuCaUG- -5'
23794 5' -53.8 NC_005261.1 + 3554 0.66 0.924937
Target:  5'- --cGCGGCGggcgCGgCGCCGCuAAGGcGCg -3'
miRNA:   3'- aauCGUCGCa---GCgGCGGUG-UUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 103965 0.66 0.913132
Target:  5'- --cGCGGCG--GCCGCCACAcggAAGcGCu -3'
miRNA:   3'- aauCGUCGCagCGGCGGUGU---UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 135428 0.66 0.919164
Target:  5'- -gAGguGCGcUCGCaCGCCGCccAGgcgGCg -3'
miRNA:   3'- aaUCguCGC-AGCG-GCGGUGuuUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 101406 0.66 0.927173
Target:  5'- -cAGCAGCGcCGCUugcgucacgacgucgGCCGCcGAGgcgGCg -3'
miRNA:   3'- aaUCGUCGCaGCGG---------------CGGUGuUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 1312 0.66 0.913747
Target:  5'- -cGGCGGCGgcacgcgcuccgggaCGCCGCCGCGccGcGCc -3'
miRNA:   3'- aaUCGUCGCa--------------GCGGCGGUGUuuCaUG- -5'
23794 5' -53.8 NC_005261.1 + 4468 0.66 0.924937
Target:  5'- -cGGCGGCccGUCGCgcggCGCCGCGgcGUAg -3'
miRNA:   3'- aaUCGUCG--CAGCG----GCGGUGUuuCAUg -5'
23794 5' -53.8 NC_005261.1 + 71994 0.66 0.919164
Target:  5'- --cGCAGCGUCGCCccugGCCuuaacgcCGGGGgcgACg -3'
miRNA:   3'- aauCGUCGCAGCGG----CGGu------GUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 112078 0.66 0.913132
Target:  5'- --cGuCGGCGagGgCGCCACGuGGUGCg -3'
miRNA:   3'- aauC-GUCGCagCgGCGGUGUuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 98309 0.66 0.924937
Target:  5'- -cGGgGGCGggCGCCGCCGCcagcgGCg -3'
miRNA:   3'- aaUCgUCGCa-GCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 85547 0.66 0.913132
Target:  5'- -gGGCGGCuccgucugCGgCGCCGCGAGGUucgGCg -3'
miRNA:   3'- aaUCGUCGca------GCgGCGGUGUUUCA---UG- -5'
23794 5' -53.8 NC_005261.1 + 106110 0.66 0.924937
Target:  5'- -cGGcCGGCGUCGCCGgCGCGc----- -3'
miRNA:   3'- aaUC-GUCGCAGCGGCgGUGUuucaug -5'
23794 5' -53.8 NC_005261.1 + 131196 0.66 0.919164
Target:  5'- --cGCGGCGcggUCGCCGCCgGCGcgcccgcGUACg -3'
miRNA:   3'- aauCGUCGC---AGCGGCGG-UGUuu-----CAUG- -5'
23794 5' -53.8 NC_005261.1 + 35850 0.66 0.928823
Target:  5'- -aGGCGGCGcaccgaaauggaggUgGCCGCCu--GGGUGCg -3'
miRNA:   3'- aaUCGUCGC--------------AgCGGCGGuguUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 32267 0.66 0.924937
Target:  5'- --cGCAcGCcgaggCGCCGCCGCu-GGUGCu -3'
miRNA:   3'- aauCGU-CGca---GCGGCGGUGuuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 75481 0.66 0.924937
Target:  5'- -cGGCGGCGcggGCCGCUACGAgcgcGGgGCg -3'
miRNA:   3'- aaUCGUCGCag-CGGCGGUGUU----UCaUG- -5'
23794 5' -53.8 NC_005261.1 + 4003 0.66 0.919164
Target:  5'- gUAGCGGCGgcUCauggccacgcagGCCGCCAC---GUGCg -3'
miRNA:   3'- aAUCGUCGC--AG------------CGGCGGUGuuuCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.