miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 66448 0.65 0.938729
Target:  5'- --cGCGGCGcgCGCCGCCGgucccgcCAGgcgcgcguccucgcGGUACa -3'
miRNA:   3'- aauCGUCGCa-GCGGCGGU-------GUU--------------UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 102935 0.74 0.514154
Target:  5'- --cGCAGCGcCGCCGCCGCugcGGcgGCg -3'
miRNA:   3'- aauCGUCGCaGCGGCGGUGuu-UCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 93480 0.74 0.524376
Target:  5'- -gGGCGcGCGUCGcCCGCgGCGAAGcGCg -3'
miRNA:   3'- aaUCGU-CGCAGC-GGCGgUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 67372 0.74 0.524376
Target:  5'- -cGGCAGCGcCaCCGCCGCGAAG-ACc -3'
miRNA:   3'- aaUCGUCGCaGcGGCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 67992 0.74 0.545042
Target:  5'- --cGCAGCGUCGUCGCgCACAAcggGGUc- -3'
miRNA:   3'- aauCGUCGCAGCGGCG-GUGUU---UCAug -5'
23794 5' -53.8 NC_005261.1 + 101639 0.73 0.555475
Target:  5'- -cGGCcGCGUCG-CGCCGCAccGUGCu -3'
miRNA:   3'- aaUCGuCGCAGCgGCGGUGUuuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 23603 0.73 0.565966
Target:  5'- gUGGUGGCuGUCGCCGCCGCugccGGGGcGCg -3'
miRNA:   3'- aAUCGUCG-CAGCGGCGGUG----UUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 93841 0.73 0.58709
Target:  5'- -gGGCGGCGcCGCCGagcaguCCACGAGGcGCg -3'
miRNA:   3'- aaUCGUCGCaGCGGC------GGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 105979 0.73 0.58709
Target:  5'- --cGCGGCGUcgaCGCCGCCcGCGAAGgcCa -3'
miRNA:   3'- aauCGUCGCA---GCGGCGG-UGUUUCauG- -5'
23794 5' -53.8 NC_005261.1 + 29313 0.74 0.499983
Target:  5'- -cGGCAGCG-CGCCGCCGCcgcccggccgcGUGCg -3'
miRNA:   3'- aaUCGUCGCaGCGGCGGUGuuu--------CAUG- -5'
23794 5' -53.8 NC_005261.1 + 95741 0.75 0.474141
Target:  5'- -cAGCGGCGcCGCCGCCGCcgccGGGgGCg -3'
miRNA:   3'- aaUCGUCGCaGCGGCGGUGu---UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 88340 0.75 0.464381
Target:  5'- cUGGCGGCGcccCGCCGCCGCGgcGUucACa -3'
miRNA:   3'- aAUCGUCGCa--GCGGCGGUGUuuCA--UG- -5'
23794 5' -53.8 NC_005261.1 + 98205 0.8 0.254351
Target:  5'- -gGGCAGCGggCGCCGCCACGGcAGcGCg -3'
miRNA:   3'- aaUCGUCGCa-GCGGCGGUGUU-UCaUG- -5'
23794 5' -53.8 NC_005261.1 + 203 0.79 0.287767
Target:  5'- -cAGCGGUGcCGCCGCCGCcccuGGUGCu -3'
miRNA:   3'- aaUCGUCGCaGCGGCGGUGuu--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 137886 0.79 0.287767
Target:  5'- -cAGCGGUGcCGCCGCCGCcccuGGUGCu -3'
miRNA:   3'- aaUCGUCGCaGCGGCGGUGuu--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 78010 0.78 0.324541
Target:  5'- -cAGCAGCa--GCCGCCGCAGcAGUACg -3'
miRNA:   3'- aaUCGUCGcagCGGCGGUGUU-UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 97845 0.78 0.332303
Target:  5'- -gGGCGGCGggCGCCGCCGCGGcAGcGCg -3'
miRNA:   3'- aaUCGUCGCa-GCGGCGGUGUU-UCaUG- -5'
23794 5' -53.8 NC_005261.1 + 118582 0.76 0.417239
Target:  5'- -cGGCGGCGcgcgcCGCCGCCGCGGAGcucGCg -3'
miRNA:   3'- aaUCGUCGCa----GCGGCGGUGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 37360 0.75 0.464381
Target:  5'- -gGGCGGUGcUCGCCGCC-CGAGGcgGCg -3'
miRNA:   3'- aaUCGUCGC-AGCGGCGGuGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 46992 0.75 0.464381
Target:  5'- -cGGCAGCGcgcgccgCGCCGCCGCGA--UGCg -3'
miRNA:   3'- aaUCGUCGCa------GCGGCGGUGUUucAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.