Results 1 - 20 of 222 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 101155 | 0.85 | 0.132414 |
Target: 5'- -cGGCGGCG-CGCCGCCGCGAAGaGCu -3' miRNA: 3'- aaUCGUCGCaGCGGCGGUGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 98205 | 0.8 | 0.254351 |
Target: 5'- -gGGCAGCGggCGCCGCCACGGcAGcGCg -3' miRNA: 3'- aaUCGUCGCa-GCGGCGGUGUU-UCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 203 | 0.79 | 0.287767 |
Target: 5'- -cAGCGGUGcCGCCGCCGCcccuGGUGCu -3' miRNA: 3'- aaUCGUCGCaGCGGCGGUGuu--UCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 137886 | 0.79 | 0.287767 |
Target: 5'- -cAGCGGUGcCGCCGCCGCcccuGGUGCu -3' miRNA: 3'- aaUCGUCGCaGCGGCGGUGuu--UCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 78010 | 0.78 | 0.324541 |
Target: 5'- -cAGCAGCa--GCCGCCGCAGcAGUACg -3' miRNA: 3'- aaUCGUCGcagCGGCGGUGUU-UCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 97845 | 0.78 | 0.332303 |
Target: 5'- -gGGCGGCGggCGCCGCCGCGGcAGcGCg -3' miRNA: 3'- aaUCGUCGCa-GCGGCGGUGUU-UCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 118582 | 0.76 | 0.417239 |
Target: 5'- -cGGCGGCGcgcgcCGCCGCCGCGGAGcucGCg -3' miRNA: 3'- aaUCGUCGCa----GCGGCGGUGUUUCa--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 37360 | 0.75 | 0.464381 |
Target: 5'- -gGGCGGUGcUCGCCGCC-CGAGGcgGCg -3' miRNA: 3'- aaUCGUCGC-AGCGGCGGuGUUUCa-UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 46992 | 0.75 | 0.464381 |
Target: 5'- -cGGCAGCGcgcgccgCGCCGCCGCGA--UGCg -3' miRNA: 3'- aaUCGUCGCa------GCGGCGGUGUUucAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 88340 | 0.75 | 0.464381 |
Target: 5'- cUGGCGGCGcccCGCCGCCGCGgcGUucACa -3' miRNA: 3'- aAUCGUCGCa--GCGGCGGUGUuuCA--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 95741 | 0.75 | 0.474141 |
Target: 5'- -cAGCGGCGcCGCCGCCGCcgccGGGgGCg -3' miRNA: 3'- aaUCGUCGCaGCGGCGGUGu---UUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 29313 | 0.74 | 0.499983 |
Target: 5'- -cGGCAGCG-CGCCGCCGCcgcccggccgcGUGCg -3' miRNA: 3'- aaUCGUCGCaGCGGCGGUGuuu--------CAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 102935 | 0.74 | 0.514154 |
Target: 5'- --cGCAGCGcCGCCGCCGCugcGGcgGCg -3' miRNA: 3'- aauCGUCGCaGCGGCGGUGuu-UCa-UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 93480 | 0.74 | 0.524376 |
Target: 5'- -gGGCGcGCGUCGcCCGCgGCGAAGcGCg -3' miRNA: 3'- aaUCGU-CGCAGC-GGCGgUGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 67372 | 0.74 | 0.524376 |
Target: 5'- -cGGCAGCGcCaCCGCCGCGAAG-ACc -3' miRNA: 3'- aaUCGUCGCaGcGGCGGUGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 67992 | 0.74 | 0.545042 |
Target: 5'- --cGCAGCGUCGUCGCgCACAAcggGGUc- -3' miRNA: 3'- aauCGUCGCAGCGGCG-GUGUU---UCAug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 101639 | 0.73 | 0.555475 |
Target: 5'- -cGGCcGCGUCG-CGCCGCAccGUGCu -3' miRNA: 3'- aaUCGuCGCAGCgGCGGUGUuuCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 23603 | 0.73 | 0.565966 |
Target: 5'- gUGGUGGCuGUCGCCGCCGCugccGGGGcGCg -3' miRNA: 3'- aAUCGUCG-CAGCGGCGGUG----UUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 93841 | 0.73 | 0.58709 |
Target: 5'- -gGGCGGCGcCGCCGagcaguCCACGAGGcGCg -3' miRNA: 3'- aaUCGUCGCaGCGGC------GGUGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 105979 | 0.73 | 0.58709 |
Target: 5'- --cGCGGCGUcgaCGCCGCCcGCGAAGgcCa -3' miRNA: 3'- aauCGUCGCA---GCGGCGG-UGUUUCauG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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