miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 203 0.79 0.287767
Target:  5'- -cAGCGGUGcCGCCGCCGCcccuGGUGCu -3'
miRNA:   3'- aaUCGUCGCaGCGGCGGUGuu--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 406 0.68 0.829713
Target:  5'- -cGGCAGCGguccuggUC-CCGCgACGGGGUGCc -3'
miRNA:   3'- aaUCGUCGC-------AGcGGCGgUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 552 0.71 0.703972
Target:  5'- -cGGCGGC-UCgGCCGCCGCGcGGUGa -3'
miRNA:   3'- aaUCGUCGcAG-CGGCGGUGUuUCAUg -5'
23794 5' -53.8 NC_005261.1 + 973 0.7 0.745179
Target:  5'- -gAGCGGCGg-GCCGCgCGCAGAGc-- -3'
miRNA:   3'- aaUCGUCGCagCGGCG-GUGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 1312 0.66 0.913747
Target:  5'- -cGGCGGCGgcacgcgcuccgggaCGCCGCCGCGccGcGCc -3'
miRNA:   3'- aaUCGUCGCa--------------GCGGCGGUGUuuCaUG- -5'
23794 5' -53.8 NC_005261.1 + 1528 0.69 0.794183
Target:  5'- -cAGCuccAGCGcgCGCCGCcCGCAggccAGGUACa -3'
miRNA:   3'- aaUCG---UCGCa-GCGGCG-GUGU----UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 1594 0.68 0.850958
Target:  5'- gUUGGCGGCGcgguggcuggccgccUCGCCcuCCGCGAAGUcCg -3'
miRNA:   3'- -AAUCGUCGC---------------AGCGGc-GGUGUUUCAuG- -5'
23794 5' -53.8 NC_005261.1 + 1799 0.67 0.893496
Target:  5'- --cGCAGCGgCGgCGCCcCGGGGUAg -3'
miRNA:   3'- aauCGUCGCaGCgGCGGuGUUUCAUg -5'
23794 5' -53.8 NC_005261.1 + 1833 0.66 0.935702
Target:  5'- -aAGCGGCcUCGgCGCgCGCGAAG-GCg -3'
miRNA:   3'- aaUCGUCGcAGCgGCG-GUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 2196 0.72 0.651051
Target:  5'- -cAGCAGCcgGUUGCCcagcGCCGCGAgcaGGUGCg -3'
miRNA:   3'- aaUCGUCG--CAGCGG----CGGUGUU---UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 3433 0.71 0.718548
Target:  5'- -gGGcCAGCGUCcaggcgggcgcgcggGCCGCCGCGccgcgcgucGAGUACc -3'
miRNA:   3'- aaUC-GUCGCAG---------------CGGCGGUGU---------UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 3554 0.66 0.924937
Target:  5'- --cGCGGCGggcgCGgCGCCGCuAAGGcGCg -3'
miRNA:   3'- aauCGUCGCa---GCgGCGGUG-UUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 3851 0.69 0.803548
Target:  5'- -cAGCGGCGcCGgCGCCGCGcGGccgGCg -3'
miRNA:   3'- aaUCGUCGCaGCgGCGGUGUuUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 4003 0.66 0.919164
Target:  5'- gUAGCGGCGgcUCauggccacgcagGCCGCCAC---GUGCg -3'
miRNA:   3'- aAUCGUCGC--AG------------CGGCGGUGuuuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 4087 0.72 0.640379
Target:  5'- -cGGCAGCGgCGCCGUCACGcucccGGUGa -3'
miRNA:   3'- aaUCGUCGCaGCGGCGGUGUu----UCAUg -5'
23794 5' -53.8 NC_005261.1 + 4405 0.67 0.892802
Target:  5'- -cGGCGGCGgcgCGCUGCCGggccaggccucgcCGGAGgGCg -3'
miRNA:   3'- aaUCGUCGCa--GCGGCGGU-------------GUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 4468 0.66 0.924937
Target:  5'- -cGGCGGCccGUCGCgcggCGCCGCGgcGUAg -3'
miRNA:   3'- aaUCGUCG--CAGCG----GCGGUGUuuCAUg -5'
23794 5' -53.8 NC_005261.1 + 4840 0.69 0.794183
Target:  5'- -cGGCGGCGUccgCGCCGCagccuCAAGGgcgGCg -3'
miRNA:   3'- aaUCGUCGCA---GCGGCGgu---GUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 5520 0.67 0.906841
Target:  5'- -cGGCGGCGagGCCGCCGgCuucGGcGCg -3'
miRNA:   3'- aaUCGUCGCagCGGCGGU-Guu-UCaUG- -5'
23794 5' -53.8 NC_005261.1 + 10905 0.72 0.661707
Target:  5'- -cGGCGGCGgcagCGCCGCCGCcGGccGCg -3'
miRNA:   3'- aaUCGUCGCa---GCGGCGGUGuUUcaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.