miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 11126 0.68 0.863855
Target:  5'- -cGGCAGCGUgCGCCGCCu-------- -3'
miRNA:   3'- aaUCGUCGCA-GCGGCGGuguuucaug -5'
23794 5' -53.8 NC_005261.1 + 12177 0.67 0.886447
Target:  5'- -aGGcCAGCGcCGCCGCCACc------ -3'
miRNA:   3'- aaUC-GUCGCaGCGGCGGUGuuucaug -5'
23794 5' -53.8 NC_005261.1 + 12198 0.71 0.724749
Target:  5'- --uGCAGCGcCGCCGCC----GGUGCc -3'
miRNA:   3'- aauCGUCGCaGCGGCGGuguuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 12337 0.67 0.906841
Target:  5'- cUUGGcCGGCGcggcCGCCGCCGCGGcg-GCa -3'
miRNA:   3'- -AAUC-GUCGCa---GCGGCGGUGUUucaUG- -5'
23794 5' -53.8 NC_005261.1 + 12805 0.67 0.885729
Target:  5'- --cGuCGGCGUCGCUGCCguccuccGCGAAGg-- -3'
miRNA:   3'- aauC-GUCGCAGCGGCGG-------UGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 13113 0.71 0.693479
Target:  5'- -cGGgGGCGUCgGCgGCCGCGGGGcGCg -3'
miRNA:   3'- aaUCgUCGCAG-CGgCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 13656 0.71 0.672336
Target:  5'- --cGCcGUGcCGCCGCCGCGGGGgggGCg -3'
miRNA:   3'- aauCGuCGCaGCGGCGGUGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 13860 0.67 0.900295
Target:  5'- --cGcCGGCGUCGCCGgCgGCccggucguacagGAAGUACa -3'
miRNA:   3'- aauC-GUCGCAGCGGC-GgUG------------UUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 14349 0.67 0.906841
Target:  5'- -cAGCAGCGgcagcaGCCGCgGCcGGGgcgGCg -3'
miRNA:   3'- aaUCGUCGCag----CGGCGgUGuUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 14743 0.66 0.933632
Target:  5'- gUGGCAGgGgcgaucggcgccgCGCCGCgACAGGGggGCc -3'
miRNA:   3'- aAUCGUCgCa------------GCGGCGgUGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 15586 0.7 0.764188
Target:  5'- gUAGCaugacgaAGCaGUCGCCGUCgACGAGGUAg -3'
miRNA:   3'- aAUCG-------UCG-CAGCGGCGG-UGUUUCAUg -5'
23794 5' -53.8 NC_005261.1 + 15803 0.69 0.794183
Target:  5'- --cGCGGCcagCGCCGCCACccaGAAGaGCa -3'
miRNA:   3'- aauCGUCGca-GCGGCGGUG---UUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 16053 0.71 0.703972
Target:  5'- -gGGCAGCGggcccgCGCCgaGCCggcgcguguagACGAAGUACg -3'
miRNA:   3'- aaUCGUCGCa-----GCGG--CGG-----------UGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 16394 0.67 0.906841
Target:  5'- --cGCcGuCGUCGUCGCCGgGcGGUGCg -3'
miRNA:   3'- aauCGuC-GCAGCGGCGGUgUuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 19036 0.7 0.765177
Target:  5'- -gGGCAGcCGgagaGCCGCCAggcaGGGGUACg -3'
miRNA:   3'- aaUCGUC-GCag--CGGCGGUg---UUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 21647 0.7 0.774988
Target:  5'- --cGCGGaCGcCGCUGCCGCAccgccGGUACg -3'
miRNA:   3'- aauCGUC-GCaGCGGCGGUGUu----UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 22813 0.69 0.812742
Target:  5'- -cGGCGGCGcugcCGCCGCCGCcguugGCg -3'
miRNA:   3'- aaUCGUCGCa---GCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 23212 0.71 0.714398
Target:  5'- --cGCAGCGgcgGCCGCgCGCAAaagccGGUGCa -3'
miRNA:   3'- aauCGUCGCag-CGGCG-GUGUU-----UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 23603 0.73 0.565966
Target:  5'- gUGGUGGCuGUCGCCGCCGCugccGGGGcGCg -3'
miRNA:   3'- aAUCGUCG-CAGCGGCGGUG----UUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 27451 0.71 0.703972
Target:  5'- uUUGGCGGCGg-GCCGCCccGCGGGGcggGCa -3'
miRNA:   3'- -AAUCGUCGCagCGGCGG--UGUUUCa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.