Results 21 - 40 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23799 | 5' | -60 | NC_005261.1 | + | 85965 | 0.66 | 0.715518 |
Target: 5'- uGGCGuGGUCCGUgauugcgcgcUCGAGCUgcgccgcCGACGGg -3' miRNA: 3'- uUCGC-CCGGGCGa---------AGCUCGA-------GCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 93943 | 0.66 | 0.676648 |
Target: 5'- -cGCGGGCgCCGCcucCGGGCggUCGGCc- -3' miRNA: 3'- uuCGCCCG-GGCGaa-GCUCG--AGCUGuc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 82056 | 0.66 | 0.686687 |
Target: 5'- -cGCGGGCCaCGUcgcCGGG-UCGACGGc -3' miRNA: 3'- uuCGCCCGG-GCGaa-GCUCgAGCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 121775 | 0.66 | 0.666573 |
Target: 5'- cGGUGGGguggCCGCggccggCGGGCUgGGCAGg -3' miRNA: 3'- uUCGCCCg---GGCGaa----GCUCGAgCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 68589 | 0.66 | 0.686687 |
Target: 5'- gAGGCGGG-CCGCgg-GAGCggggcCGACGGc -3' miRNA: 3'- -UUCGCCCgGGCGaagCUCGa----GCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 86196 | 0.67 | 0.656471 |
Target: 5'- cGAGCGGGCuCCGCgUCGGcGCgcCGAacCGGg -3' miRNA: 3'- -UUCGCCCG-GGCGaAGCU-CGa-GCU--GUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 95013 | 0.67 | 0.626082 |
Target: 5'- gGGGCGGGCuauaaagccgCCGCcggCGGcGCUCGGCGc -3' miRNA: 3'- -UUCGCCCG----------GGCGaa-GCU-CGAGCUGUc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 38946 | 0.67 | 0.64635 |
Target: 5'- cGGGCGGGCCgCgGCgcgCGGGCUgCG-CAGc -3' miRNA: 3'- -UUCGCCCGG-G-CGaa-GCUCGA-GCuGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 136643 | 0.67 | 0.64635 |
Target: 5'- aAGGCcuGGUCCGCcUgGAGCUCGAUg- -3' miRNA: 3'- -UUCGc-CCGGGCGaAgCUCGAGCUGuc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 127754 | 0.67 | 0.605832 |
Target: 5'- gGAGCGGG-CCGCggCGGGCgcgaaGACGc -3' miRNA: 3'- -UUCGCCCgGGCGaaGCUCGag---CUGUc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 10022 | 0.67 | 0.656471 |
Target: 5'- cGGGCGGGCCuCGCgUCGGgggcGCUCGcuCAc -3' miRNA: 3'- -UUCGCCCGG-GCGaAGCU----CGAGCu-GUc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 127920 | 0.67 | 0.636217 |
Target: 5'- uGGGCucGGGCCCGC-UCGAuGCggCGcACAGc -3' miRNA: 3'- -UUCG--CCCGGGCGaAGCU-CGa-GC-UGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 70700 | 0.67 | 0.605832 |
Target: 5'- cAGCGcGGCCCGCg-CGGGCaCGGCc- -3' miRNA: 3'- uUCGC-CCGGGCGaaGCUCGaGCUGuc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 111414 | 0.67 | 0.605832 |
Target: 5'- cGGGCGGGCCacaCGCcggCGGGCaagaGACGGa -3' miRNA: 3'- -UUCGCCCGG---GCGaa-GCUCGag--CUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 21228 | 0.67 | 0.615951 |
Target: 5'- cGGCGGGCCCGU--CG-GCU-GGCGGc -3' miRNA: 3'- uUCGCCCGGGCGaaGCuCGAgCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 136612 | 0.67 | 0.626082 |
Target: 5'- gGAGCGGcGCgCGCgcgcCGAGggCGGCGGg -3' miRNA: 3'- -UUCGCC-CGgGCGaa--GCUCgaGCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 24902 | 0.67 | 0.636217 |
Target: 5'- cGGCGGGCgCCcCUUCaAGCccUCGGCGGc -3' miRNA: 3'- uUCGCCCG-GGcGAAGcUCG--AGCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 75072 | 0.67 | 0.636217 |
Target: 5'- -cGCGcGCCgGCgg-GGGCUCGGCGGg -3' miRNA: 3'- uuCGCcCGGgCGaagCUCGAGCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 81771 | 0.67 | 0.636217 |
Target: 5'- -cGCGGGCCagga-CGAGCUCG-CGGa -3' miRNA: 3'- uuCGCCCGGgcgaaGCUCGAGCuGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 116489 | 0.67 | 0.636217 |
Target: 5'- gGGGCGGGCgCGCgguauaaaGAGCgccgccgCGGCGGc -3' miRNA: 3'- -UUCGCCCGgGCGaag-----CUCGa------GCUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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