miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 5' -60 NC_005261.1 + 23242 0.66 0.666573
Target:  5'- cAGCGGGCCgGCcugcUCGGGCgagagCuGCAGc -3'
miRNA:   3'- uUCGCCCGGgCGa---AGCUCGa----GcUGUC- -5'
23799 5' -60 NC_005261.1 + 135083 0.66 0.706623
Target:  5'- cGGCGGGCUCGCggCccggcggcgGAGCgcgaGGCGGa -3'
miRNA:   3'- uUCGCCCGGGCGaaG---------CUCGag--CUGUC- -5'
23799 5' -60 NC_005261.1 + 53945 0.66 0.676648
Target:  5'- -cGCGGcGCgCCGCgcucgCGGGUUCGGguGg -3'
miRNA:   3'- uuCGCC-CG-GGCGaa---GCUCGAGCUguC- -5'
23799 5' -60 NC_005261.1 + 47451 0.66 0.676648
Target:  5'- cAGGCGcccGGCCCGCUUgCGcgggGGCUgGGCGa -3'
miRNA:   3'- -UUCGC---CCGGGCGAA-GC----UCGAgCUGUc -5'
23799 5' -60 NC_005261.1 + 85965 0.66 0.715518
Target:  5'- uGGCGuGGUCCGUgauugcgcgcUCGAGCUgcgccgcCGACGGg -3'
miRNA:   3'- uUCGC-CCGGGCGa---------AGCUCGA-------GCUGUC- -5'
23799 5' -60 NC_005261.1 + 127815 0.66 0.666573
Target:  5'- cGGCGGG-CCGC-UCGcGCUCG-CGGc -3'
miRNA:   3'- uUCGCCCgGGCGaAGCuCGAGCuGUC- -5'
23799 5' -60 NC_005261.1 + 115423 0.66 0.676648
Target:  5'- cAGcCGGGgCCGCggccCGAGCUCGcgcucGCGGc -3'
miRNA:   3'- uUC-GCCCgGGCGaa--GCUCGAGC-----UGUC- -5'
23799 5' -60 NC_005261.1 + 78850 0.66 0.686687
Target:  5'- cGGCGGcGCCCGCcgccggagcgCGAGCcgCGuCAGc -3'
miRNA:   3'- uUCGCC-CGGGCGaa--------GCUCGa-GCuGUC- -5'
23799 5' -60 NC_005261.1 + 72509 0.66 0.696681
Target:  5'- gAAGCGGGCgCCGCaUCcucCUUGGCGGc -3'
miRNA:   3'- -UUCGCCCG-GGCGaAGcucGAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 51004 0.66 0.666573
Target:  5'- -cGUGGGCgCgGCgg-GAGCUCGGCGa -3'
miRNA:   3'- uuCGCCCG-GgCGaagCUCGAGCUGUc -5'
23799 5' -60 NC_005261.1 + 68589 0.66 0.686687
Target:  5'- gAGGCGGG-CCGCgg-GAGCggggcCGACGGc -3'
miRNA:   3'- -UUCGCCCgGGCGaagCUCGa----GCUGUC- -5'
23799 5' -60 NC_005261.1 + 95712 0.66 0.666573
Target:  5'- -cGCGGGCUCGCgcUCGGGCcCGcCGc -3'
miRNA:   3'- uuCGCCCGGGCGa-AGCUCGaGCuGUc -5'
23799 5' -60 NC_005261.1 + 109874 0.66 0.676648
Target:  5'- cAGCGGGgCCCGCgggCGGGCgcccCGGg -3'
miRNA:   3'- uUCGCCC-GGGCGaa-GCUCGagcuGUC- -5'
23799 5' -60 NC_005261.1 + 59084 0.66 0.696681
Target:  5'- -cGCGGGUgcgCCGCgcccUCGcGCUCG-CAGg -3'
miRNA:   3'- uuCGCCCG---GGCGa---AGCuCGAGCuGUC- -5'
23799 5' -60 NC_005261.1 + 73775 0.66 0.716503
Target:  5'- gAGGCGcuGGCCUGCgaCGuGCgcgCGGCGGu -3'
miRNA:   3'- -UUCGC--CCGGGCGaaGCuCGa--GCUGUC- -5'
23799 5' -60 NC_005261.1 + 42215 0.66 0.676648
Target:  5'- -cGCGGGCgccCCGCcgCGAGCUCcGCc- -3'
miRNA:   3'- uuCGCCCG---GGCGaaGCUCGAGcUGuc -5'
23799 5' -60 NC_005261.1 + 82056 0.66 0.686687
Target:  5'- -cGCGGGCCaCGUcgcCGGG-UCGACGGc -3'
miRNA:   3'- uuCGCCCGG-GCGaa-GCUCgAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 90074 0.66 0.696681
Target:  5'- -cGCGGGCgCCGa---GGGCagCGACGGg -3'
miRNA:   3'- uuCGCCCG-GGCgaagCUCGa-GCUGUC- -5'
23799 5' -60 NC_005261.1 + 121775 0.66 0.666573
Target:  5'- cGGUGGGguggCCGCggccggCGGGCUgGGCAGg -3'
miRNA:   3'- uUCGCCCg---GGCGaa----GCUCGAgCUGUC- -5'
23799 5' -60 NC_005261.1 + 93943 0.66 0.676648
Target:  5'- -cGCGGGCgCCGCcucCGGGCggUCGGCc- -3'
miRNA:   3'- uuCGCCCG-GGCGaa-GCUCG--AGCUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.