Results 1 - 20 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23799 | 5' | -60 | NC_005261.1 | + | 16056 | 0.8 | 0.108364 |
Target: 5'- cAGCGGGCCCGCgcCGAGC-CGGCGc -3' miRNA: 3'- uUCGCCCGGGCGaaGCUCGaGCUGUc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 53895 | 0.79 | 0.1202 |
Target: 5'- gAAGCGGGCCCGCUUCGcgagcGGCgccCGACu- -3' miRNA: 3'- -UUCGCCCGGGCGAAGC-----UCGa--GCUGuc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 79413 | 0.78 | 0.140222 |
Target: 5'- cGAGCaGGCCCGUgucggCGAGCUCGGCGc -3' miRNA: 3'- -UUCGcCCGGGCGaa---GCUCGAGCUGUc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 23772 | 0.77 | 0.180455 |
Target: 5'- cGGGCGGGCCgGCUagggUGGGCUCGcCGGg -3' miRNA: 3'- -UUCGCCCGGgCGAa---GCUCGAGCuGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 23829 | 0.77 | 0.180455 |
Target: 5'- cGGGCGGGCCgGCUagggUGGGCUCGcCGGg -3' miRNA: 3'- -UUCGCCCGGgCGAa---GCUCGAGCuGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 104438 | 0.75 | 0.219702 |
Target: 5'- uGAGCGGGCCCGCgUCGccgccGC-CGGCGGc -3' miRNA: 3'- -UUCGCCCGGGCGaAGCu----CGaGCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 106626 | 0.75 | 0.230591 |
Target: 5'- -cGCGGaGCCgCGCgaCGAGCUCGGCGa -3' miRNA: 3'- uuCGCC-CGG-GCGaaGCUCGAGCUGUc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 242 | 0.75 | 0.241932 |
Target: 5'- cGAGCGGGCCCgGCUgcggCGgcGGCUgCGGCGGc -3' miRNA: 3'- -UUCGCCCGGG-CGAa---GC--UCGA-GCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 137925 | 0.75 | 0.241932 |
Target: 5'- cGAGCGGGCCCgGCUgcggCGgcGGCUgCGGCGGc -3' miRNA: 3'- -UUCGCCCGGG-CGAa---GC--UCGA-GCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 23509 | 0.74 | 0.266005 |
Target: 5'- -cGCGGGCCCugggagcacGCggUCGGGCgagCGGCAGa -3' miRNA: 3'- uuCGCCCGGG---------CGa-AGCUCGa--GCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 135014 | 0.74 | 0.266005 |
Target: 5'- cGGCGGGCCCGCacgCG-GCcgCGGCGGc -3' miRNA: 3'- uUCGCCCGGGCGaa-GCuCGa-GCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 21813 | 0.74 | 0.266005 |
Target: 5'- cGGGcCGGGCCCGCggCGGGCgcgCGuGCGGg -3' miRNA: 3'- -UUC-GCCCGGGCGaaGCUCGa--GC-UGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 97728 | 0.73 | 0.324255 |
Target: 5'- cGGGCGGGCUaacgGCUggcaggggcggggCGGGCUCGGCGGc -3' miRNA: 3'- -UUCGCCCGGg---CGAa------------GCUCGAGCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 49091 | 0.72 | 0.334591 |
Target: 5'- -cGCGGGCCCGCU--GAGCgCGcGCAGc -3' miRNA: 3'- uuCGCCCGGGCGAagCUCGaGC-UGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 23886 | 0.72 | 0.34977 |
Target: 5'- cGGGCGGGCCgGCUagggUGGGCUCGcUGGg -3' miRNA: 3'- -UUCGCCCGGgCGAa---GCUCGAGCuGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 88010 | 0.72 | 0.357542 |
Target: 5'- cGGCGGGCCCGUUaaagCG-GC-CGGCGGu -3' miRNA: 3'- uUCGCCCGGGCGAa---GCuCGaGCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 10234 | 0.72 | 0.376683 |
Target: 5'- cAGGCGGGCCCGCgcacucgccgccgCGGGCcUGGCGc -3' miRNA: 3'- -UUCGCCCGGGCGaa-----------GCUCGaGCUGUc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 976 | 0.71 | 0.381575 |
Target: 5'- cGGCGGGCCgCGCgcaGAGCggaggaGACGGg -3' miRNA: 3'- uUCGCCCGG-GCGaagCUCGag----CUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 72446 | 0.71 | 0.381575 |
Target: 5'- cGGCGGgggcGCCCGCggCGAGCgCGGCGa -3' miRNA: 3'- uUCGCC----CGGGCGaaGCUCGaGCUGUc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 20124 | 0.71 | 0.398184 |
Target: 5'- -cGCGGGCCCGCagCG-GCUCcGCGa -3' miRNA: 3'- uuCGCCCGGGCGaaGCuCGAGcUGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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