miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 5' -60 NC_005261.1 + 23509 0.74 0.266005
Target:  5'- -cGCGGGCCCugggagcacGCggUCGGGCgagCGGCAGa -3'
miRNA:   3'- uuCGCCCGGG---------CGa-AGCUCGa--GCUGUC- -5'
23799 5' -60 NC_005261.1 + 73775 0.66 0.716503
Target:  5'- gAGGCGcuGGCCUGCgaCGuGCgcgCGGCGGu -3'
miRNA:   3'- -UUCGC--CCGGGCGaaGCuCGa--GCUGUC- -5'
23799 5' -60 NC_005261.1 + 20124 0.71 0.398184
Target:  5'- -cGCGGGCCCGCagCG-GCUCcGCGa -3'
miRNA:   3'- uuCGCCCGGGCGaaGCuCGAGcUGUc -5'
23799 5' -60 NC_005261.1 + 72446 0.71 0.381575
Target:  5'- cGGCGGgggcGCCCGCggCGAGCgCGGCGa -3'
miRNA:   3'- uUCGCC----CGGGCGaaGCUCGaGCUGUc -5'
23799 5' -60 NC_005261.1 + 976 0.71 0.381575
Target:  5'- cGGCGGGCCgCGCgcaGAGCggaggaGACGGg -3'
miRNA:   3'- uUCGCCCGG-GCGaagCUCGag----CUGUC- -5'
23799 5' -60 NC_005261.1 + 10234 0.72 0.376683
Target:  5'- cAGGCGGGCCCGCgcacucgccgccgCGGGCcUGGCGc -3'
miRNA:   3'- -UUCGCCCGGGCGaa-----------GCUCGaGCUGUc -5'
23799 5' -60 NC_005261.1 + 88010 0.72 0.357542
Target:  5'- cGGCGGGCCCGUUaaagCG-GC-CGGCGGu -3'
miRNA:   3'- uUCGCCCGGGCGAa---GCuCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 23886 0.72 0.34977
Target:  5'- cGGGCGGGCCgGCUagggUGGGCUCGcUGGg -3'
miRNA:   3'- -UUCGCCCGGgCGAa---GCUCGAGCuGUC- -5'
23799 5' -60 NC_005261.1 + 49091 0.72 0.334591
Target:  5'- -cGCGGGCCCGCU--GAGCgCGcGCAGc -3'
miRNA:   3'- uuCGCCCGGGCGAagCUCGaGC-UGUC- -5'
23799 5' -60 NC_005261.1 + 97728 0.73 0.324255
Target:  5'- cGGGCGGGCUaacgGCUggcaggggcggggCGGGCUCGGCGGc -3'
miRNA:   3'- -UUCGCCCGGg---CGAa------------GCUCGAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 135014 0.74 0.266005
Target:  5'- cGGCGGGCCCGCacgCG-GCcgCGGCGGc -3'
miRNA:   3'- uUCGCCCGGGCGaa-GCuCGa-GCUGUC- -5'
23799 5' -60 NC_005261.1 + 16056 0.8 0.108364
Target:  5'- cAGCGGGCCCGCgcCGAGC-CGGCGc -3'
miRNA:   3'- uUCGCCCGGGCGaaGCUCGaGCUGUc -5'
23799 5' -60 NC_005261.1 + 21813 0.74 0.266005
Target:  5'- cGGGcCGGGCCCGCggCGGGCgcgCGuGCGGg -3'
miRNA:   3'- -UUC-GCCCGGGCGaaGCUCGa--GC-UGUC- -5'
23799 5' -60 NC_005261.1 + 137925 0.75 0.241932
Target:  5'- cGAGCGGGCCCgGCUgcggCGgcGGCUgCGGCGGc -3'
miRNA:   3'- -UUCGCCCGGG-CGAa---GC--UCGA-GCUGUC- -5'
23799 5' -60 NC_005261.1 + 242 0.75 0.241932
Target:  5'- cGAGCGGGCCCgGCUgcggCGgcGGCUgCGGCGGc -3'
miRNA:   3'- -UUCGCCCGGG-CGAa---GC--UCGA-GCUGUC- -5'
23799 5' -60 NC_005261.1 + 106626 0.75 0.230591
Target:  5'- -cGCGGaGCCgCGCgaCGAGCUCGGCGa -3'
miRNA:   3'- uuCGCC-CGG-GCGaaGCUCGAGCUGUc -5'
23799 5' -60 NC_005261.1 + 104438 0.75 0.219702
Target:  5'- uGAGCGGGCCCGCgUCGccgccGC-CGGCGGc -3'
miRNA:   3'- -UUCGCCCGGGCGaAGCu----CGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 23829 0.77 0.180455
Target:  5'- cGGGCGGGCCgGCUagggUGGGCUCGcCGGg -3'
miRNA:   3'- -UUCGCCCGGgCGAa---GCUCGAGCuGUC- -5'
23799 5' -60 NC_005261.1 + 23772 0.77 0.180455
Target:  5'- cGGGCGGGCCgGCUagggUGGGCUCGcCGGg -3'
miRNA:   3'- -UUCGCCCGGgCGAa---GCUCGAGCuGUC- -5'
23799 5' -60 NC_005261.1 + 79413 0.78 0.140222
Target:  5'- cGAGCaGGCCCGUgucggCGAGCUCGGCGc -3'
miRNA:   3'- -UUCGcCCGGGCGaa---GCUCGAGCUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.