miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 5' -60 NC_005261.1 + 242 0.75 0.241932
Target:  5'- cGAGCGGGCCCgGCUgcggCGgcGGCUgCGGCGGc -3'
miRNA:   3'- -UUCGCCCGGG-CGAa---GC--UCGA-GCUGUC- -5'
23799 5' -60 NC_005261.1 + 976 0.71 0.381575
Target:  5'- cGGCGGGCCgCGCgcaGAGCggaggaGACGGg -3'
miRNA:   3'- uUCGCCCGG-GCGaagCUCGag----CUGUC- -5'
23799 5' -60 NC_005261.1 + 1424 0.68 0.545758
Target:  5'- gGGGCGGcGCCCGCcUCcAGCaccagCGGCGGc -3'
miRNA:   3'- -UUCGCC-CGGGCGaAGcUCGa----GCUGUC- -5'
23799 5' -60 NC_005261.1 + 2751 0.68 0.555662
Target:  5'- cGGCGGGCCguCGCggCGGGcCUCGAg-- -3'
miRNA:   3'- uUCGCCCGG--GCGaaGCUC-GAGCUguc -5'
23799 5' -60 NC_005261.1 + 4179 0.68 0.565617
Target:  5'- --cCGGGCCCGCgagcUUCGcGCUCuGCAGc -3'
miRNA:   3'- uucGCCCGGGCG----AAGCuCGAGcUGUC- -5'
23799 5' -60 NC_005261.1 + 4526 0.69 0.516412
Target:  5'- -cGCGGGCgCCGCggCGAGggCGcCGGg -3'
miRNA:   3'- uuCGCCCG-GGCGaaGCUCgaGCuGUC- -5'
23799 5' -60 NC_005261.1 + 5161 0.68 0.585659
Target:  5'- cGGCGGG-CCGCgUCGAGCagGGcCGGg -3'
miRNA:   3'- uUCGCCCgGGCGaAGCUCGagCU-GUC- -5'
23799 5' -60 NC_005261.1 + 10022 0.67 0.656471
Target:  5'- cGGGCGGGCCuCGCgUCGGgggcGCUCGcuCAc -3'
miRNA:   3'- -UUCGCCCGG-GCGaAGCU----CGAGCu-GUc -5'
23799 5' -60 NC_005261.1 + 10234 0.72 0.376683
Target:  5'- cAGGCGGGCCCGCgcacucgccgccgCGGGCcUGGCGc -3'
miRNA:   3'- -UUCGCCCGGGCGaa-----------GCUCGaGCUGUc -5'
23799 5' -60 NC_005261.1 + 11845 0.67 0.656471
Target:  5'- -cGCGGGCgCGCguucgCGAGCgcgagCGuCAGc -3'
miRNA:   3'- uuCGCCCGgGCGaa---GCUCGa----GCuGUC- -5'
23799 5' -60 NC_005261.1 + 12728 0.71 0.420457
Target:  5'- -cGCGGGCCCGCcggcccccugggCGGGCcCGGCGa -3'
miRNA:   3'- uuCGCCCGGGCGaa----------GCUCGaGCUGUc -5'
23799 5' -60 NC_005261.1 + 12781 0.68 0.555662
Target:  5'- cGGgGGGCUCGUcggCGAGCUCGucguCGGc -3'
miRNA:   3'- uUCgCCCGGGCGaa-GCUCGAGCu---GUC- -5'
23799 5' -60 NC_005261.1 + 13099 0.68 0.555662
Target:  5'- cGGCGGGCUCgGCUcggGGGCgUCGGCGGc -3'
miRNA:   3'- uUCGCCCGGG-CGAag-CUCG-AGCUGUC- -5'
23799 5' -60 NC_005261.1 + 16056 0.8 0.108364
Target:  5'- cAGCGGGCCCGCgcCGAGC-CGGCGc -3'
miRNA:   3'- uUCGCCCGGGCGaaGCUCGaGCUGUc -5'
23799 5' -60 NC_005261.1 + 17553 0.7 0.432757
Target:  5'- -cGCGGGCCCGCc----GUUCGGCGGu -3'
miRNA:   3'- uuCGCCCGGGCGaagcuCGAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 20124 0.71 0.398184
Target:  5'- -cGCGGGCCCGCagCG-GCUCcGCGa -3'
miRNA:   3'- uuCGCCCGGGCGaaGCuCGAGcUGUc -5'
23799 5' -60 NC_005261.1 + 20720 0.67 0.605832
Target:  5'- --uCGGGCCgCGCUg-GGGCUCGGCc- -3'
miRNA:   3'- uucGCCCGG-GCGAagCUCGAGCUGuc -5'
23799 5' -60 NC_005261.1 + 20873 0.68 0.555662
Target:  5'- -cGCGGGCCgGCcaUCGccAGCUCGugGc -3'
miRNA:   3'- uuCGCCCGGgCGa-AGC--UCGAGCugUc -5'
23799 5' -60 NC_005261.1 + 21228 0.67 0.615951
Target:  5'- cGGCGGGCCCGU--CG-GCU-GGCGGc -3'
miRNA:   3'- uUCGCCCGGGCGaaGCuCGAgCUGUC- -5'
23799 5' -60 NC_005261.1 + 21708 0.66 0.716503
Target:  5'- cGAGCGcuucacggaGGaCUGCUUCGAGCcgaUCGACAc -3'
miRNA:   3'- -UUCGC---------CCgGGCGAAGCUCG---AGCUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.