miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 5' -60 NC_005261.1 + 28595 0.71 0.398184
Target:  5'- cGGCGGgccGCCCGCgcCGAGCU-GGCGGa -3'
miRNA:   3'- uUCGCC---CGGGCGaaGCUCGAgCUGUC- -5'
23799 5' -60 NC_005261.1 + 20124 0.71 0.398184
Target:  5'- -cGCGGGCCCGCagCG-GCUCcGCGa -3'
miRNA:   3'- uuCGCCCGGGCGaaGCuCGAGcUGUc -5'
23799 5' -60 NC_005261.1 + 12728 0.71 0.420457
Target:  5'- -cGCGGGCCCGCcggcccccugggCGGGCcCGGCGa -3'
miRNA:   3'- uuCGCCCGGGCGaa----------GCUCGaGCUGUc -5'
23799 5' -60 NC_005261.1 + 104172 0.71 0.423949
Target:  5'- -cGCGGGCgCCGCgcgcgggucgUCGGGCggGACGGc -3'
miRNA:   3'- uuCGCCCG-GGCGa---------AGCUCGagCUGUC- -5'
23799 5' -60 NC_005261.1 + 123420 0.7 0.432757
Target:  5'- gGGGCGGGCUCGCcaCGGGC-CG-CAGc -3'
miRNA:   3'- -UUCGCCCGGGCGaaGCUCGaGCuGUC- -5'
23799 5' -60 NC_005261.1 + 17553 0.7 0.432757
Target:  5'- -cGCGGGCCCGCc----GUUCGGCGGu -3'
miRNA:   3'- uuCGCCCGGGCGaagcuCGAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 38919 0.7 0.432757
Target:  5'- -cGCGGGCCCGCg-CGccaAGC-CGGCGGc -3'
miRNA:   3'- uuCGCCCGGGCGaaGC---UCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 97390 0.7 0.440775
Target:  5'- -cGCGGcuuucgcGCCUGCcgCGGGCUUGGCGGg -3'
miRNA:   3'- uuCGCC-------CGGGCGaaGCUCGAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 52678 0.7 0.459803
Target:  5'- cGAGCGGGCCCuGCUcgCGGGCgCGcCGc -3'
miRNA:   3'- -UUCGCCCGGG-CGAa-GCUCGaGCuGUc -5'
23799 5' -60 NC_005261.1 + 104124 0.7 0.459803
Target:  5'- -cGCGcGGUUCGCcgCGAGCUCGGCc- -3'
miRNA:   3'- uuCGC-CCGGGCGaaGCUCGAGCUGuc -5'
23799 5' -60 NC_005261.1 + 55054 0.7 0.469017
Target:  5'- -cGCGGGgCCGg--CGAGCUCGGCc- -3'
miRNA:   3'- uuCGCCCgGGCgaaGCUCGAGCUGuc -5'
23799 5' -60 NC_005261.1 + 29198 0.7 0.469017
Target:  5'- -cGCGGcGCCCGCg-CGGGCgcgCGACuGg -3'
miRNA:   3'- uuCGCC-CGGGCGaaGCUCGa--GCUGuC- -5'
23799 5' -60 NC_005261.1 + 40494 0.7 0.478324
Target:  5'- gGAGCGGGCgauggucauggCCaGCUUCGAGCugaugccguagUCGACGc -3'
miRNA:   3'- -UUCGCCCG-----------GG-CGAAGCUCG-----------AGCUGUc -5'
23799 5' -60 NC_005261.1 + 84132 0.69 0.497204
Target:  5'- cGGGCGGGgUCGCUggCGGGcCUCGGCc- -3'
miRNA:   3'- -UUCGCCCgGGCGAa-GCUC-GAGCUGuc -5'
23799 5' -60 NC_005261.1 + 121394 0.69 0.516412
Target:  5'- cGGCGGcGCCUGCc-CGAGUgCGACGGc -3'
miRNA:   3'- uUCGCC-CGGGCGaaGCUCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 98208 0.69 0.516412
Target:  5'- cAGCGGGCgCCGCcaCGgcAGCgCGGCGGg -3'
miRNA:   3'- uUCGCCCG-GGCGaaGC--UCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 4526 0.69 0.516412
Target:  5'- -cGCGGGCgCCGCggCGAGggCGcCGGg -3'
miRNA:   3'- uuCGCCCG-GGCGaaGCUCgaGCuGUC- -5'
23799 5' -60 NC_005261.1 + 125749 0.69 0.526128
Target:  5'- gGGGCcgGGGCCaggGCUgccgCGGGCUCGGCu- -3'
miRNA:   3'- -UUCG--CCCGGg--CGAa---GCUCGAGCUGuc -5'
23799 5' -60 NC_005261.1 + 32748 0.69 0.526128
Target:  5'- -cGCGcGGCCCGCcgcucuaCGGGCUCGGaGGg -3'
miRNA:   3'- uuCGC-CCGGGCGaa-----GCUCGAGCUgUC- -5'
23799 5' -60 NC_005261.1 + 128802 0.69 0.526128
Target:  5'- --cCGGGCCCGCggCGGGgCUCGcgcuGCGGc -3'
miRNA:   3'- uucGCCCGGGCGaaGCUC-GAGC----UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.