miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 5' -60 NC_005261.1 + 21813 0.74 0.266005
Target:  5'- cGGGcCGGGCCCGCggCGGGCgcgCGuGCGGg -3'
miRNA:   3'- -UUC-GCCCGGGCGaaGCUCGa--GC-UGUC- -5'
23799 5' -60 NC_005261.1 + 22776 0.68 0.5917
Target:  5'- gGGGCGGGcCCCGCgagaaggggguugUCGcGGC-CGGCGGc -3'
miRNA:   3'- -UUCGCCC-GGGCGa------------AGC-UCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 23160 0.68 0.584653
Target:  5'- aGAGUGGGCCCggcaggcGCgcCGGGggCGACAGc -3'
miRNA:   3'- -UUCGCCCGGG-------CGaaGCUCgaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 23242 0.66 0.666573
Target:  5'- cAGCGGGCCgGCcugcUCGGGCgagagCuGCAGc -3'
miRNA:   3'- uUCGCCCGGgCGa---AGCUCGa----GcUGUC- -5'
23799 5' -60 NC_005261.1 + 23509 0.74 0.266005
Target:  5'- -cGCGGGCCCugggagcacGCggUCGGGCgagCGGCAGa -3'
miRNA:   3'- uuCGCCCGGG---------CGa-AGCUCGa--GCUGUC- -5'
23799 5' -60 NC_005261.1 + 23700 0.66 0.716503
Target:  5'- -cGCGaGGCCCGCccggUCGGGUggcaagCGGguGg -3'
miRNA:   3'- uuCGC-CCGGGCGa---AGCUCGa-----GCUguC- -5'
23799 5' -60 NC_005261.1 + 23772 0.77 0.180455
Target:  5'- cGGGCGGGCCgGCUagggUGGGCUCGcCGGg -3'
miRNA:   3'- -UUCGCCCGGgCGAa---GCUCGAGCuGUC- -5'
23799 5' -60 NC_005261.1 + 23829 0.77 0.180455
Target:  5'- cGGGCGGGCCgGCUagggUGGGCUCGcCGGg -3'
miRNA:   3'- -UUCGCCCGGgCGAa---GCUCGAGCuGUC- -5'
23799 5' -60 NC_005261.1 + 23886 0.72 0.34977
Target:  5'- cGGGCGGGCCgGCUagggUGGGCUCGcUGGg -3'
miRNA:   3'- -UUCGCCCGGgCGAa---GCUCGAGCuGUC- -5'
23799 5' -60 NC_005261.1 + 24690 0.67 0.64635
Target:  5'- gGGGCGGGUgcaUGCaaaUCGGGC-CGGCAGg -3'
miRNA:   3'- -UUCGCCCGg--GCGa--AGCUCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 24902 0.67 0.636217
Target:  5'- cGGCGGGCgCCcCUUCaAGCccUCGGCGGc -3'
miRNA:   3'- uUCGCCCG-GGcGAAGcUCG--AGCUGUC- -5'
23799 5' -60 NC_005261.1 + 28595 0.71 0.398184
Target:  5'- cGGCGGgccGCCCGCgcCGAGCU-GGCGGa -3'
miRNA:   3'- uUCGCC---CGGGCGaaGCUCGAgCUGUC- -5'
23799 5' -60 NC_005261.1 + 29198 0.7 0.469017
Target:  5'- -cGCGGcGCCCGCg-CGGGCgcgCGACuGg -3'
miRNA:   3'- uuCGCC-CGGGCGaaGCUCGa--GCUGuC- -5'
23799 5' -60 NC_005261.1 + 31312 0.67 0.64635
Target:  5'- -cGCgGGGCCCGCgggCGcGCUCGcCGc -3'
miRNA:   3'- uuCG-CCCGGGCGaa-GCuCGAGCuGUc -5'
23799 5' -60 NC_005261.1 + 32748 0.69 0.526128
Target:  5'- -cGCGcGGCCCGCcgcucuaCGGGCUCGGaGGg -3'
miRNA:   3'- uuCGC-CCGGGCGaa-----GCUCGAGCUgUC- -5'
23799 5' -60 NC_005261.1 + 33479 0.68 0.585659
Target:  5'- cAGcCGGGCCCGCUcgcggggcccgCGAGCaccaggggCGGCGGc -3'
miRNA:   3'- uUC-GCCCGGGCGAa----------GCUCGa-------GCUGUC- -5'
23799 5' -60 NC_005261.1 + 33756 0.68 0.555662
Target:  5'- gGGGcCGGGCCCGCUcgCGGGgCccgCGGCGa -3'
miRNA:   3'- -UUC-GCCCGGGCGAa-GCUC-Ga--GCUGUc -5'
23799 5' -60 NC_005261.1 + 33807 0.68 0.555662
Target:  5'- cGGCGGGCuuGuCUUUGGGCggcCGGgGGg -3'
miRNA:   3'- uUCGCCCGggC-GAAGCUCGa--GCUgUC- -5'
23799 5' -60 NC_005261.1 + 33837 0.68 0.595733
Target:  5'- -cGCGGGCCCccuggcGCUgggCGGGC-CGGgAGg -3'
miRNA:   3'- uuCGCCCGGG------CGAa--GCUCGaGCUgUC- -5'
23799 5' -60 NC_005261.1 + 38919 0.7 0.432757
Target:  5'- -cGCGGGCCCGCg-CGccaAGC-CGGCGGc -3'
miRNA:   3'- uuCGCCCGGGCGaaGC---UCGaGCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.