miRNA display CGI


Results 41 - 60 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 3' -61.4 NC_005261.1 + 70339 0.77 0.190621
Target:  5'- aCGCGUCga---GCGgGCCGGGGACCg -3'
miRNA:   3'- gGCGUAGgacugCGCgCGGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 55407 0.76 0.199903
Target:  5'- aCUGCAUCUacGCGCGCGCCGGcuGGcGCCa -3'
miRNA:   3'- -GGCGUAGGacUGCGCGCGGCC--CC-UGG- -5'
23802 3' -61.4 NC_005261.1 + 103256 0.76 0.20469
Target:  5'- cCCGCGUCCgcGCacagccgcuccaGCGCGCCGGGuGCCg -3'
miRNA:   3'- -GGCGUAGGacUG------------CGCGCGGCCCcUGG- -5'
23802 3' -61.4 NC_005261.1 + 33360 0.76 0.209576
Target:  5'- aCCGCcgCCgGGC-CGCGCCGGgcugcGGGCCg -3'
miRNA:   3'- -GGCGuaGGaCUGcGCGCGGCC-----CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 30354 0.76 0.219649
Target:  5'- cUCGCGgcCCUGAaggccgGCGCGCCGGGcGCCg -3'
miRNA:   3'- -GGCGUa-GGACUg-----CGCGCGGCCCcUGG- -5'
23802 3' -61.4 NC_005261.1 + 29196 0.76 0.219649
Target:  5'- gCCGCGgcgcCCgcgcgGGCGCGCGaCUGGGGcCCg -3'
miRNA:   3'- -GGCGUa---GGa----CUGCGCGC-GGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 106553 0.88 0.031596
Target:  5'- gCCGCGUCCgggccGGCGCGCGCCGgccccGGGGCCg -3'
miRNA:   3'- -GGCGUAGGa----CUGCGCGCGGC-----CCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 56314 0.75 0.225364
Target:  5'- cCCGCcugcuacugacgagCCUGGCGCGCGCCGaGG-CCg -3'
miRNA:   3'- -GGCGua------------GGACUGCGCGCGGCcCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 97406 0.75 0.235532
Target:  5'- gCCGCGggCUUGGCggGCGCGCCGGGccuGCCc -3'
miRNA:   3'- -GGCGUa-GGACUG--CGCGCGGCCCc--UGG- -5'
23802 3' -61.4 NC_005261.1 + 97077 0.75 0.240481
Target:  5'- uCCGCGUCg-GAgGCGCcggcuggGCCGGGGGCg -3'
miRNA:   3'- -GGCGUAGgaCUgCGCG-------CGGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 58276 0.75 0.241036
Target:  5'- gCCGCGcUCacggGGCcgGCGCGCCGGGGGgCg -3'
miRNA:   3'- -GGCGU-AGga--CUG--CGCGCGGCCCCUgG- -5'
23802 3' -61.4 NC_005261.1 + 28569 0.75 0.241036
Target:  5'- cCCGCcgggCCgaGGCGCgcgaGCGCCGGcGGGCCg -3'
miRNA:   3'- -GGCGua--GGa-CUGCG----CGCGGCC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 105738 0.75 0.246648
Target:  5'- aCgGCGUCCacGAacuCGCGCG-CGGGGACCu -3'
miRNA:   3'- -GgCGUAGGa-CU---GCGCGCgGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 131824 0.75 0.246648
Target:  5'- gCCGCcgCUUGACGCgGCGCCcgccugcugcGGGGuguCCa -3'
miRNA:   3'- -GGCGuaGGACUGCG-CGCGG----------CCCCu--GG- -5'
23802 3' -61.4 NC_005261.1 + 5478 0.75 0.252367
Target:  5'- cCCGCuAUC---GCGCGCGCCGGGGGgUa -3'
miRNA:   3'- -GGCG-UAGgacUGCGCGCGGCCCCUgG- -5'
23802 3' -61.4 NC_005261.1 + 110982 0.74 0.258195
Target:  5'- aCGCcgCCUu-CGUGCGCCuGGGGACg -3'
miRNA:   3'- gGCGuaGGAcuGCGCGCGG-CCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 86890 0.74 0.264132
Target:  5'- gCCGCGcCCUGGucCGCGCGCgGcGcGGACCc -3'
miRNA:   3'- -GGCGUaGGACU--GCGCGCGgC-C-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 69762 0.74 0.27018
Target:  5'- gCGCGggg-GGCG-GCGCCGGGGACUg -3'
miRNA:   3'- gGCGUaggaCUGCgCGCGGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 33891 0.74 0.288992
Target:  5'- gCGCGUCaccggGGCGCGCGUauaaaGcGGGGCCg -3'
miRNA:   3'- gGCGUAGga---CUGCGCGCGg----C-CCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 73454 0.74 0.288992
Target:  5'- gCCGCGUCCgcgucCGCGCGCCcccccuGGGCCg -3'
miRNA:   3'- -GGCGUAGGacu--GCGCGCGGcc----CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.