miRNA display CGI


Results 41 - 60 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 3' -61.4 NC_005261.1 + 21355 0.66 0.67972
Target:  5'- cCCGCcccuggcuugagcCCUGAC-CGCGCCGGaGGCg -3'
miRNA:   3'- -GGCGua-----------GGACUGcGCGCGGCCcCUGg -5'
23802 3' -61.4 NC_005261.1 + 129683 0.66 0.704751
Target:  5'- -gGCGUCgC-GACuCGgGCCGGGG-CCg -3'
miRNA:   3'- ggCGUAG-GaCUGcGCgCGGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 54146 0.66 0.685523
Target:  5'- gCCGCAcgcggCCguGCGCGggguUGCCGGGaaGACCa -3'
miRNA:   3'- -GGCGUa----GGacUGCGC----GCGGCCC--CUGG- -5'
23802 3' -61.4 NC_005261.1 + 134703 0.66 0.695161
Target:  5'- aCUGCGaCCgcGGCGCGCccagacccgGCCG-GGACCc -3'
miRNA:   3'- -GGCGUaGGa-CUGCGCG---------CGGCcCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 136603 0.66 0.695161
Target:  5'- gCGCAgCgUGgagcggcgcGCGCGCGCCGaGGGCg -3'
miRNA:   3'- gGCGUaGgAC---------UGCGCGCGGCcCCUGg -5'
23802 3' -61.4 NC_005261.1 + 104161 0.66 0.695161
Target:  5'- aCCGCgccGUCCgcgGGCGcCGCGCgCGggucgucgggcGGGACg -3'
miRNA:   3'- -GGCG---UAGGa--CUGC-GCGCG-GC-----------CCCUGg -5'
23802 3' -61.4 NC_005261.1 + 50573 0.66 0.675844
Target:  5'- aCGCG-CCUGGCGUcCGCCgcgagcGGGGAg- -3'
miRNA:   3'- gGCGUaGGACUGCGcGCGG------CCCCUgg -5'
23802 3' -61.4 NC_005261.1 + 109465 0.66 0.684557
Target:  5'- cCCGCuUCgCgcguGCGCGCccgagcgcaaaugGCCGGGGcCCg -3'
miRNA:   3'- -GGCGuAG-Gac--UGCGCG-------------CGGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 129313 0.66 0.685523
Target:  5'- cCCGCGccugCgCUGGCGcCGCGUCGccGACCu -3'
miRNA:   3'- -GGCGUa---G-GACUGC-GCGCGGCccCUGG- -5'
23802 3' -61.4 NC_005261.1 + 131220 0.66 0.675844
Target:  5'- cCCGCGUaCgUGGcCGCGCGCaucgaGGcuGACCu -3'
miRNA:   3'- -GGCGUA-GgACU-GCGCGCGg----CCc-CUGG- -5'
23802 3' -61.4 NC_005261.1 + 116366 0.66 0.695161
Target:  5'- uCCGUG-CCgccGCGCGCaauGCCgaucgGGGGGCCg -3'
miRNA:   3'- -GGCGUaGGac-UGCGCG---CGG-----CCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 44309 0.66 0.695161
Target:  5'- gCCGCugcCCgcgGGCGC-CGCagacgGGGGGCUg -3'
miRNA:   3'- -GGCGua-GGa--CUGCGcGCGg----CCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 96985 0.66 0.675844
Target:  5'- aCGCggCCUcGGCgcggcuaaGCGCGCCauugGGcGGGCCg -3'
miRNA:   3'- gGCGuaGGA-CUG--------CGCGCGG----CC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 35680 0.66 0.675844
Target:  5'- gCCGCAcccCCgccGGCgagccccgGUGgGCCGGGGGCUc -3'
miRNA:   3'- -GGCGUa--GGa--CUG--------CGCgCGGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 48317 0.66 0.704751
Target:  5'- gCGCGUCg-GGCcCGgGCuCGGGGGCg -3'
miRNA:   3'- gGCGUAGgaCUGcGCgCG-GCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 127795 0.66 0.695161
Target:  5'- gCgGCGggCC-GGCGcCGCGgCGGcGGGCCg -3'
miRNA:   3'- -GgCGUa-GGaCUGC-GCGCgGCC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 6413 0.66 0.675844
Target:  5'- gCGCGUuggcccggCCUGcuCGCGagggcgGuCCGGGGGCCg -3'
miRNA:   3'- gGCGUA--------GGACu-GCGCg-----C-GGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 71993 0.66 0.675844
Target:  5'- gCGCAgcgucgccCCUGGCcuuaaCGCCGGGGGCg -3'
miRNA:   3'- gGCGUa-------GGACUGcgc--GCGGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 64866 0.66 0.702837
Target:  5'- gUCGCGUCCcagaucagcggcGGCGggaGCGCCGGGu-CCa -3'
miRNA:   3'- -GGCGUAGGa-----------CUGCg--CGCGGCCCcuGG- -5'
23802 3' -61.4 NC_005261.1 + 69360 0.66 0.666134
Target:  5'- aCGCggCCgcGCGCGCGCU--GGACCu -3'
miRNA:   3'- gGCGuaGGacUGCGCGCGGccCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.