miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 3' -61.4 NC_005261.1 + 117531 0.66 0.675844
Target:  5'- gCGUGUCCac-CGCgGCGCCGGagGGGCUg -3'
miRNA:   3'- gGCGUAGGacuGCG-CGCGGCC--CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 54146 0.66 0.685523
Target:  5'- gCCGCAcgcggCCguGCGCGggguUGCCGGGaaGACCa -3'
miRNA:   3'- -GGCGUa----GGacUGCGC----GCGGCCC--CUGG- -5'
23802 3' -61.4 NC_005261.1 + 45099 0.66 0.695161
Target:  5'- aCGCG-CCUG-CGCGUggaGCCGGGcACg -3'
miRNA:   3'- gGCGUaGGACuGCGCG---CGGCCCcUGg -5'
23802 3' -61.4 NC_005261.1 + 113564 0.66 0.666134
Target:  5'- aCCGCGagCaGugGUcgguggccgccGCGCUGGGcGACCu -3'
miRNA:   3'- -GGCGUagGaCugCG-----------CGCGGCCC-CUGG- -5'
23802 3' -61.4 NC_005261.1 + 71993 0.66 0.675844
Target:  5'- gCGCAgcgucgccCCUGGCcuuaaCGCCGGGGGCg -3'
miRNA:   3'- gGCGUa-------GGACUGcgc--GCGGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 71411 0.66 0.666134
Target:  5'- gCgGCGUCC-GGCGCGgGgcCCGGcccGGGCCc -3'
miRNA:   3'- -GgCGUAGGaCUGCGCgC--GGCC---CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 129313 0.66 0.685523
Target:  5'- cCCGCGccugCgCUGGCGcCGCGUCGccGACCu -3'
miRNA:   3'- -GGCGUa---G-GACUGC-GCGCGGCccCUGG- -5'
23802 3' -61.4 NC_005261.1 + 93654 0.66 0.675844
Target:  5'- uCCGCguacgcccaccgGUCCgcgGGCgGCgGCGCCGGcGGggcGCCg -3'
miRNA:   3'- -GGCG------------UAGGa--CUG-CG-CGCGGCC-CC---UGG- -5'
23802 3' -61.4 NC_005261.1 + 21405 0.66 0.675844
Target:  5'- gUGCGUUCccGCGcCGCGCCGGccGGugCa -3'
miRNA:   3'- gGCGUAGGacUGC-GCGCGGCC--CCugG- -5'
23802 3' -61.4 NC_005261.1 + 68205 0.66 0.666134
Target:  5'- cCCGCcgCC-GGCGCG-GCCGacaacGGcGACCc -3'
miRNA:   3'- -GGCGuaGGaCUGCGCgCGGC-----CC-CUGG- -5'
23802 3' -61.4 NC_005261.1 + 19539 0.66 0.675844
Target:  5'- cCCGCGUCac--CGCcaGCGCCGuGGGgagcGCCa -3'
miRNA:   3'- -GGCGUAGgacuGCG--CGCGGC-CCC----UGG- -5'
23802 3' -61.4 NC_005261.1 + 131473 0.66 0.685523
Target:  5'- cCCGCcUCCgcgaGCGCGCCGucGACg -3'
miRNA:   3'- -GGCGuAGGacugCGCGCGGCccCUGg -5'
23802 3' -61.4 NC_005261.1 + 21355 0.66 0.67972
Target:  5'- cCCGCcccuggcuugagcCCUGAC-CGCGCCGGaGGCg -3'
miRNA:   3'- -GGCGua-----------GGACUGcGCGCGGCCcCUGg -5'
23802 3' -61.4 NC_005261.1 + 44251 0.66 0.695161
Target:  5'- gCGCggCC-GACgccgcgGCGCGCgGGGGGgCg -3'
miRNA:   3'- gGCGuaGGaCUG------CGCGCGgCCCCUgG- -5'
23802 3' -61.4 NC_005261.1 + 89825 0.66 0.685523
Target:  5'- cCCGCGgcaCUucgcGGC-CGgGCCGGaGGGCCg -3'
miRNA:   3'- -GGCGUag-GA----CUGcGCgCGGCC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 28177 0.66 0.675844
Target:  5'- cCCGUcUCgCUG-CGCGCcgaaGCCGGcGGCCu -3'
miRNA:   3'- -GGCGuAG-GACuGCGCG----CGGCCcCUGG- -5'
23802 3' -61.4 NC_005261.1 + 84976 0.66 0.685523
Target:  5'- gCGCGUCC--GCGaUGCGCCGGcGcACCc -3'
miRNA:   3'- gGCGUAGGacUGC-GCGCGGCC-CcUGG- -5'
23802 3' -61.4 NC_005261.1 + 100727 0.66 0.666134
Target:  5'- gCCGCG-CCgcGCGCGCGCgCGGcGGCg -3'
miRNA:   3'- -GGCGUaGGacUGCGCGCG-GCCcCUGg -5'
23802 3' -61.4 NC_005261.1 + 88166 0.66 0.685523
Target:  5'- gCGCAgccgggCCggggcGACGCcggcgGCGCCGGcgaggcGGGCCg -3'
miRNA:   3'- gGCGUa-----GGa----CUGCG-----CGCGGCC------CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 55839 0.66 0.685523
Target:  5'- gCCGgguCGUCCcGGuC-CGCGCCGGcgcGGACCa -3'
miRNA:   3'- -GGC---GUAGGaCU-GcGCGCGGCC---CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.