miRNA display CGI


Results 21 - 40 of 325 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 3' -61.4 NC_005261.1 + 10005 0.67 0.656398
Target:  5'- cCCGCuugCCacccgaccgGGCGggccuCGCGUCGGGGGCg -3'
miRNA:   3'- -GGCGua-GGa--------CUGC-----GCGCGGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 10205 0.66 0.714285
Target:  5'- aCCGCGugcUCCcagGGCcCGCGCCugcccaGGcGGGCCc -3'
miRNA:   3'- -GGCGU---AGGa--CUGcGCGCGG------CC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 10429 0.68 0.549636
Target:  5'- gCUGUGcCCacgGACGCGUGCUGGGaGGCg -3'
miRNA:   3'- -GGCGUaGGa--CUGCGCGCGGCCC-CUGg -5'
23802 3' -61.4 NC_005261.1 + 10542 0.66 0.704751
Target:  5'- gCUGUcgCCcccGGCGCGCcuGCCGggcccacucuuuGGGGCCg -3'
miRNA:   3'- -GGCGuaGGa--CUGCGCG--CGGC------------CCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 12293 0.77 0.189714
Target:  5'- uCCGCGUCCgccgcgggcacgGGCGCGUaGCCGGcGGGCg -3'
miRNA:   3'- -GGCGUAGGa-----------CUGCGCG-CGGCC-CCUGg -5'
23802 3' -61.4 NC_005261.1 + 12621 0.67 0.656398
Target:  5'- gCCGCcaccacgguguaGUCC-GGCGCG-GUCuGGGGCCg -3'
miRNA:   3'- -GGCG------------UAGGaCUGCGCgCGGcCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 14163 0.66 0.714285
Target:  5'- gCCGCGaaC-GGCGCGCGUCucGGGGCg -3'
miRNA:   3'- -GGCGUagGaCUGCGCGCGGc-CCCUGg -5'
23802 3' -61.4 NC_005261.1 + 15009 0.66 0.685523
Target:  5'- gCGCgggaggaggaGUUgUcGGCGgGUGCCGGGGGCg -3'
miRNA:   3'- gGCG----------UAGgA-CUGCgCGCGGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 15261 0.67 0.646644
Target:  5'- gCCGCGaucgCCccGGCgGCGcCGCCGGGGcGCg -3'
miRNA:   3'- -GGCGUa---GGa-CUG-CGC-GCGGCCCC-UGg -5'
23802 3' -61.4 NC_005261.1 + 15892 0.66 0.703794
Target:  5'- aCGCGcgggcgcuuuaucUCCcGcccCGCGCaGCCGGGG-CCg -3'
miRNA:   3'- gGCGU-------------AGGaCu--GCGCG-CGGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 16178 0.68 0.597858
Target:  5'- gCGCGggCgUGGCGgGgGUgggCGGGGGCCg -3'
miRNA:   3'- gGCGUa-GgACUGCgCgCG---GCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 16252 0.69 0.521273
Target:  5'- uCCGCG-CC-GGgGC-CGCCGGGG-CCg -3'
miRNA:   3'- -GGCGUaGGaCUgCGcGCGGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 16696 0.68 0.557283
Target:  5'- aCCGCG-CCgucgauguacaGCGCGCGCCGGuacuGGCCc -3'
miRNA:   3'- -GGCGUaGGac---------UGCGCGCGGCCc---CUGG- -5'
23802 3' -61.4 NC_005261.1 + 17468 0.69 0.493497
Target:  5'- aCUGCGggCaGACgcggGCGCGCCGGGGGguCCu -3'
miRNA:   3'- -GGCGUagGaCUG----CGCGCGGCCCCU--GG- -5'
23802 3' -61.4 NC_005261.1 + 19136 0.68 0.596886
Target:  5'- -gGCGggaacUCCUcGGCGCGCacggccaGCCGGcGGAUCa -3'
miRNA:   3'- ggCGU-----AGGA-CUGCGCG-------CGGCC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 19247 0.66 0.685523
Target:  5'- aCUGCGggggCgCUGAacaGCGCGCgCGGGuacGCCa -3'
miRNA:   3'- -GGCGUa---G-GACUg--CGCGCG-GCCCc--UGG- -5'
23802 3' -61.4 NC_005261.1 + 19539 0.66 0.675844
Target:  5'- cCCGCGUCac--CGCcaGCGCCGuGGGgagcGCCa -3'
miRNA:   3'- -GGCGUAGgacuGCG--CGCGGC-CCC----UGG- -5'
23802 3' -61.4 NC_005261.1 + 19856 0.68 0.5592
Target:  5'- uCgGCuUCCUcGCGCGagacccCGCCGGcGGGCCc -3'
miRNA:   3'- -GgCGuAGGAcUGCGC------GCGGCC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 19942 0.69 0.493497
Target:  5'- -aGCGUCCUgGGCGgGgGUgGGGcGGCCu -3'
miRNA:   3'- ggCGUAGGA-CUGCgCgCGgCCC-CUGG- -5'
23802 3' -61.4 NC_005261.1 + 20240 0.67 0.656398
Target:  5'- gCCGC-UCCgc-CGCGCGCUccauGGGcGCCg -3'
miRNA:   3'- -GGCGuAGGacuGCGCGCGG----CCCcUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.