miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 3' -61.4 NC_005261.1 + 1157 0.7 0.478963
Target:  5'- -aGCAcuUCC--ACGCGCGCCGgcccgcgccgcggccGGGGCCg -3'
miRNA:   3'- ggCGU--AGGacUGCGCGCGGC---------------CCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 1379 0.7 0.47267
Target:  5'- uCCGCGUCCcaggccacgccgGGCGCcgcggccgcggcgGCGgCGGGGGCg -3'
miRNA:   3'- -GGCGUAGGa-----------CUGCG-------------CGCgGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 1824 0.67 0.656398
Target:  5'- gCCGCGcguaagcggCCUcGGCGCGCGCgaaGGcgccGGGCCc -3'
miRNA:   3'- -GGCGUa--------GGA-CUGCGCGCGg--CC----CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 2410 0.71 0.414706
Target:  5'- cCCGCGggCCc--CGCGCGgCGGcGGGCCg -3'
miRNA:   3'- -GGCGUa-GGacuGCGCGCgGCC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 2660 0.68 0.549636
Target:  5'- gCgGCGgcUCCc-GC-CGCGCUGGGGACCc -3'
miRNA:   3'- -GgCGU--AGGacUGcGCGCGGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 2990 0.69 0.530668
Target:  5'- -gGCucggCCUGGCGgcccgGCGCCGGGGcucCCg -3'
miRNA:   3'- ggCGua--GGACUGCg----CGCGGCCCCu--GG- -5'
23802 3' -61.4 NC_005261.1 + 3340 0.7 0.475362
Target:  5'- cCCGCG-CCgcGGCgcccgGCGCGCCGGccuucaGGGCCg -3'
miRNA:   3'- -GGCGUaGGa-CUG-----CGCGCGGCC------CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 3435 0.71 0.398265
Target:  5'- gCCaGCGUCCaGGCGgGCGCgCGGGccGCCg -3'
miRNA:   3'- -GG-CGUAGGaCUGCgCGCG-GCCCc-UGG- -5'
23802 3' -61.4 NC_005261.1 + 3470 0.7 0.475362
Target:  5'- gCGCGUCgaGuAC-CGCGCCaGcGGGGCCa -3'
miRNA:   3'- gGCGUAGgaC-UGcGCGCGG-C-CCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 3534 0.68 0.597858
Target:  5'- gCgGCcgCCUcGGCGCGCaGCgCGGcGGGCg -3'
miRNA:   3'- -GgCGuaGGA-CUGCGCG-CG-GCC-CCUGg -5'
23802 3' -61.4 NC_005261.1 + 3809 0.68 0.549636
Target:  5'- gCGCAgCCgcucGCGCGCuGCCGcGGGcCCg -3'
miRNA:   3'- gGCGUaGGac--UGCGCG-CGGC-CCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 4394 0.69 0.530668
Target:  5'- aCGCggCCgggcggcggcGGCGCGCuGCCGGGccaGGCCu -3'
miRNA:   3'- gGCGuaGGa---------CUGCGCG-CGGCCC---CUGG- -5'
23802 3' -61.4 NC_005261.1 + 4517 0.67 0.656398
Target:  5'- gCGCGcCCgcgcgGGCGCcgcggcgaggGCGCCGGGcccuGGCCu -3'
miRNA:   3'- gGCGUaGGa----CUGCG----------CGCGGCCC----CUGG- -5'
23802 3' -61.4 NC_005261.1 + 5478 0.75 0.252367
Target:  5'- cCCGCuAUC---GCGCGCGCCGGGGGgUa -3'
miRNA:   3'- -GGCG-UAGgacUGCGCGCGGCCCCUgG- -5'
23802 3' -61.4 NC_005261.1 + 5824 0.72 0.343393
Target:  5'- gCgGCggCC-GAUGCGCGCCGGGuuacggcGGCCg -3'
miRNA:   3'- -GgCGuaGGaCUGCGCGCGGCCC-------CUGG- -5'
23802 3' -61.4 NC_005261.1 + 6214 0.68 0.587174
Target:  5'- cCCGCccagaCCUGGCgguccagGUGCGcCCGGGGaggGCCu -3'
miRNA:   3'- -GGCGua---GGACUG-------CGCGC-GGCCCC---UGG- -5'
23802 3' -61.4 NC_005261.1 + 6413 0.66 0.675844
Target:  5'- gCGCGUuggcccggCCUGcuCGCGagggcgGuCCGGGGGCCg -3'
miRNA:   3'- gGCGUA--------GGACu-GCGCg-----C-GGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 7055 0.73 0.308817
Target:  5'- uCCGCGUCCgGGCGUGUGgcCCaGGGGCa -3'
miRNA:   3'- -GGCGUAGGaCUGCGCGC--GGcCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 9094 0.7 0.448801
Target:  5'- gCCaGUGUCCUcacGugGUGUGCCGaGaGGGCCg -3'
miRNA:   3'- -GG-CGUAGGA---CugCGCGCGGC-C-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 9973 0.66 0.714285
Target:  5'- cCCGCccCCccgGACGCGCcUCGGcGcGGCCa -3'
miRNA:   3'- -GGCGuaGGa--CUGCGCGcGGCC-C-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.